Protein : Qrob_P0416490.2 Q. robur
Protein Identifier  ? Qrob_P0416490.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR31339:SF4 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN (PTHR31339:SF4) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 481  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103327142 1 477 + 477 Gaps:16 99.38 480 78.41 0.0 probable polygalacturonase
blastp_kegg lcl|pper:PRUPE_ppa005015mg 1 477 + 477 Gaps:15 99.38 481 78.45 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0005s06430g 38 480 + 443 Gaps:8 91.22 490 79.87 0.0 POPTRDRAFT_207070 hypothetical protein
blastp_kegg lcl|pop:POPTR_0007s04170g 61 480 + 420 Gaps:9 95.51 445 84.00 0.0 POPTRDRAFT_869058 glycoside hydrolase family 28 family protein
blastp_kegg lcl|mdm:103402450 1 477 + 477 Gaps:21 99.38 483 76.88 0.0 probable polygalacturonase
blastp_kegg lcl|rcu:RCOM_1463140 38 480 + 443 Gaps:7 93.75 480 79.33 0.0 polygalacturonase putative (EC:3.2.1.15)
blastp_kegg lcl|mdm:103416405 1 477 + 477 Gaps:21 99.38 483 76.46 0.0 probable polygalacturonase
blastp_kegg lcl|pxb:103933401 1 477 + 477 Gaps:21 99.38 483 76.67 0.0 probable polygalacturonase
blastp_kegg lcl|tcc:TCM_001499 1 477 + 477 Gaps:62 99.81 526 70.86 0.0 Pectin lyase-like superfamily protein isoform 1
blastp_kegg lcl|cit:102611232 9 480 + 472 Gaps:23 97.72 482 76.65 0.0 probable polygalacturonase-like
blastp_pdb 3jur_D 77 441 + 365 Gaps:77 87.05 448 30.00 6e-42 mol:protein length:448 Exo-poly-alpha-D-galacturonosidase
blastp_pdb 3jur_C 77 441 + 365 Gaps:77 87.05 448 30.00 6e-42 mol:protein length:448 Exo-poly-alpha-D-galacturonosidase
blastp_pdb 3jur_B 77 441 + 365 Gaps:77 87.05 448 30.00 6e-42 mol:protein length:448 Exo-poly-alpha-D-galacturonosidase
blastp_pdb 3jur_A 77 441 + 365 Gaps:77 87.05 448 30.00 6e-42 mol:protein length:448 Exo-poly-alpha-D-galacturonosidase
blastp_pdb 1bhe_A 128 454 + 327 Gaps:37 85.64 376 33.23 3e-23 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1nhc_F 167 376 + 210 Gaps:39 56.85 336 31.94 2e-09 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 167 376 + 210 Gaps:39 56.85 336 31.94 2e-09 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_D 167 376 + 210 Gaps:39 56.85 336 31.94 2e-09 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_C 167 376 + 210 Gaps:39 56.85 336 31.94 2e-09 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_B 167 376 + 210 Gaps:39 56.85 336 31.94 2e-09 mol:protein length:336 Polygalacturonase I
blastp_uniprot_sprot sp|A7PZL3|PGLR_VITVI 80 479 + 400 Gaps:10 83.50 491 48.78 2e-133 Probable polygalacturonase OS Vitis vinifera GN GSVIVT00026920001 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LW07|PGLR3_ARATH 83 475 + 393 Gaps:59 82.46 456 31.91 5e-29 Probable polygalacturonase At3g15720 OS Arabidopsis thaliana GN At3g15720 PE 1 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 22 441 + 420 Gaps:41 94.43 431 27.27 3e-23 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|P26509|PGLR2_PECSS 128 454 + 327 Gaps:37 80.10 402 33.23 1e-22 Endo-polygalacturonase OS Pectobacterium sp. (strain SCC3193) GN pehA PE 1 SV 1
blastp_uniprot_sprot sp|P18192|PGLR1_PECCC 128 454 + 327 Gaps:37 80.10 402 32.61 3e-22 Endo-polygalacturonase OS Pectobacterium carotovorum subsp. carotovorum GN peh PE 3 SV 1
blastp_uniprot_sprot sp|Q8RY29|ADPG2_ARATH 23 424 + 402 Gaps:56 92.38 433 28.75 9e-22 Polygalacturonase ADPG2 OS Arabidopsis thaliana GN ADPG2 PE 2 SV 2
blastp_uniprot_sprot sp|P27644|PGLR_RHIRD 217 389 + 173 Gaps:10 54.81 312 36.84 2e-20 Polygalacturonase OS Rhizobium radiobacter GN pgl PE 2 SV 1
blastp_uniprot_sprot sp|P35336|PGLR_ACTDE 84 410 + 327 Gaps:38 66.17 467 28.80 3e-20 Polygalacturonase OS Actinidia deliciosa PE 2 SV 1
blastp_uniprot_sprot sp|Q94AJ5|PGLR5_ARATH 78 466 + 389 Gaps:79 85.14 444 26.72 9e-19 Probable polygalacturonase At1g80170 OS Arabidopsis thaliana GN At1g80170 PE 1 SV 1
blastp_uniprot_sprot sp|Q7M1E7|PGLR2_CHAOB 84 420 + 337 Gaps:43 62.65 514 28.26 1e-18 Polygalacturonase OS Chamaecyparis obtusa PE 1 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 79 468 390 SSF51126 none none IPR011050
ProSiteProfiles 1 22 22 PS51257 none Prokaryotic membrane lipoprotein lipid attachment site profile. none
PANTHER 80 477 398 PTHR31339 none none none
Gene3D 80 456 377 G3DSA:2.160.20.10 none none IPR012334
Phobius 1 43 43 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 44 480 437 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 272 304 33 SM00710 none Parallel beta-helix repeats IPR006626
SMART 245 271 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 334 355 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 363 384 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 306 328 23 SM00710 none Parallel beta-helix repeats IPR006626
Phobius 26 38 13 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 39 43 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 80 477 398 PTHR31339:SF4 none none none
Phobius 1 25 25 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Pfam 175 453 279 PF00295 none Glycosyl hydrolases family 28 IPR000743

1 Localization

Analysis Start End Length
TMHMM 20 42 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting