Protein : Qrob_P0415350.2 Q. robur
Protein Identifier  ? Qrob_P0415350.2 Organism . Name  Quercus robur
Score  58.1 Score Type  egn
Protein Description  (M=2) PTHR31602:SF3 - GROWTH-REGULATING FACTOR 9 (PTHR31602:SF3) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 510  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0032502 developmental process A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103967711 41 509 + 469 Gaps:49 100.00 462 48.27 7e-109 growth-regulating factor 9
blastp_kegg lcl|pmum:103331814 104 484 + 381 Gaps:33 84.19 449 52.91 1e-107 growth-regulating factor 9
blastp_kegg lcl|pper:PRUPE_ppa021277mg 104 484 + 381 Gaps:32 84.46 444 54.13 1e-105 hypothetical protein
blastp_kegg lcl|tcc:TCM_005483 57 484 + 428 Gaps:75 71.78 528 54.88 3e-104 Growth-regulating factor 9 putative
blastp_kegg lcl|vvi:100242152 122 496 + 375 Gaps:55 100.00 402 51.00 3e-104 uncharacterized LOC100242152
blastp_kegg lcl|pop:POPTR_0014s06750g 97 497 + 401 Gaps:34 90.81 457 48.43 2e-102 POPTRDRAFT_244111 hypothetical protein
blastp_kegg lcl|cmo:103483332 41 490 + 450 Gaps:49 91.62 501 43.79 3e-95 growth-regulating factor 9
blastp_kegg lcl|mdm:103406262 59 509 + 451 Gaps:94 97.13 522 42.60 2e-93 growth-regulating factor 9
blastp_kegg lcl|csv:101211224 39 491 + 453 Gaps:64 91.04 502 43.54 4e-93 growth-regulating factor 9-like
blastp_kegg lcl|fve:101313153 57 503 + 447 Gaps:53 93.03 445 45.65 2e-92 growth-regulating factor 9-like
blastp_uniprot_sprot sp|Q8S9M3|GRF9_ARATH 104 464 + 361 Gaps:60 80.97 431 36.39 3e-47 Growth-regulating factor 9 OS Arabidopsis thaliana GN GRF9 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AWX7|GRF12_ORYSJ 101 435 + 335 Gaps:9 50.85 236 66.67 5e-42 Growth-regulating factor 12 OS Oryza sativa subsp. japonica GN GRF12 PE 2 SV 1
blastp_uniprot_sprot sp|Q6EPP9|GRF10_ORYSJ 104 431 + 328 Gaps:8 55.92 211 68.64 3e-41 Growth-regulating factor 10 OS Oryza sativa subsp. japonica GN GRF10 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWY6|GRF3_ORYSJ 100 426 + 327 Gaps:9 36.43 387 50.35 6e-33 Growth-regulating factor 3 OS Oryza sativa subsp. japonica GN GRF3 PE 3 SV 2
blastp_uniprot_sprot sp|Q6ZIK5|GRF4_ORYSJ 104 426 + 323 Gaps:9 27.66 394 61.47 2e-32 Growth-regulating factor 4 OS Oryza sativa subsp. japonica GN GRF4 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWX8|GRF11_ORYSJ 104 428 + 325 Gaps:6 39.03 269 58.10 5e-32 Growth-regulating factor 11 OS Oryza sativa subsp. japonica GN GRF11 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWY3|GRF6_ORYSJ 104 426 + 323 Gaps:3 18.08 603 61.47 3e-31 Growth-regulating factor 6 OS Oryza sativa subsp. japonica GN GRF6 PE 2 SV 2
blastp_uniprot_sprot sp|Q8L8A8|GRF2_ARATH 104 473 + 370 Gaps:26 28.41 535 51.32 4e-30 Growth-regulating factor 2 OS Arabidopsis thaliana GN GRF2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AWY4|GRF5_ORYSJ 102 423 + 322 Gaps:14 35.92 348 51.20 2e-29 Growth-regulating factor 5 OS Oryza sativa subsp. japonica GN GRF5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SJR5|GRF3_ARATH 103 426 + 324 Gaps:2 28.14 398 51.79 3e-29 Growth-regulating factor 3 OS Arabidopsis thaliana GN GRF3 PE 2 SV 1
rpsblast_cdd gnl|CDD|192171 171 423 + 253 none 97.83 46 77.78 4e-17 pfam08879 WRC WRC. The WRC domain named after the conserved Trp-Arg-Cys motif contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that the WRC domain functions in DNA binding.
rpsblast_cdd gnl|CDD|204086 104 137 + 34 none 91.89 37 55.88 4e-09 pfam08880 QLQ QLQ. The QLQ domain is named after the conserved Gln Leu Gln motif. The QLQ domain is found at the N-terminus of SWI2/SNF2 protein which has been shown to be involved in protein-protein interactions. This domain has thus been postulated to be involved in mediating protein interactions.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 277 503 227 PTHR31602:SF3 none none none
ProSiteProfiles 389 433 45 PS51667 none WRC domain profile. IPR014977
Pfam 104 137 34 PF08880 none QLQ IPR014978
ProSiteProfiles 103 138 36 PS51666 none QLQ domain profile. IPR014978
Pfam 171 214 44 PF08879 none WRC IPR014977
Pfam 390 427 38 PF08879 none WRC IPR014977
ProSiteProfiles 171 215 45 PS51667 none WRC domain profile. IPR014977
PANTHER 277 503 227 PTHR31602 none none IPR031137
PANTHER 104 248 145 PTHR31602 none none IPR031137
SMART 102 138 37 SM00951 none none IPR014978
PANTHER 104 248 145 PTHR31602:SF3 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting