Protein : Qrob_P0413830.2 Q. robur
Protein Identifier  ? Qrob_P0413830.2 Organism . Name  Quercus robur
Score  95.2 Score Type  egn
Protein Description  (M=5) K18810 - cyclin D1/2/4, plant Gene Prediction Quality  validated
Protein length 

Sequence

Length: 335  
Kegg Orthology  K18810
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0051726 regulation of cell cycle Any process that modulates the rate or extent of progression through the cell cycle.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_000815 8 320 + 313 Gaps:34 97.34 301 57.68 1e-106 Cyclin d1 1 putative isoform 1
blastp_kegg lcl|rcu:RCOM_0581160 1 293 + 293 Gaps:30 88.56 306 61.25 9e-104 cyclin d putative
blastp_kegg lcl|vvi:100249175 1 330 + 330 Gaps:40 97.05 305 57.77 5e-97 cyclin-D4-1-like
blastp_kegg lcl|cic:CICLE_v10026166mg 9 317 + 309 Gaps:38 94.37 302 56.49 5e-93 hypothetical protein
blastp_kegg lcl|cit:102627697 9 317 + 309 Gaps:38 94.37 302 56.49 2e-92 cyclin-D2-2-like
blastp_kegg lcl|pvu:PHAVU_003G234000g 4 313 + 310 Gaps:38 93.89 311 54.79 1e-88 hypothetical protein
blastp_kegg lcl|pop:POPTR_0007s14860g 1 301 + 301 Gaps:33 89.97 309 55.04 7e-87 POPTRDRAFT_764928 hypothetical protein
blastp_kegg lcl|gmx:100799323 10 327 + 318 Gaps:46 95.30 319 53.29 7e-86 cyclin-D1-1-like
blastp_kegg lcl|gmx:100781193 9 328 + 320 Gaps:39 96.54 318 51.14 1e-83 cyclin-D1-1-like
blastp_kegg lcl|gmx:100798996 39 319 + 281 Gaps:38 85.10 302 54.09 7e-73 cyclin-D4-1-like
blastp_pdb 2w9f_A 60 254 + 195 Gaps:18 71.22 271 29.53 5e-09 mol:protein length:271 G1/S-SPECIFIC CYCLIN-D1
blastp_pdb 2w99_A 60 254 + 195 Gaps:18 71.22 271 29.53 5e-09 mol:protein length:271 G1/S-SPECIFIC CYCLIN-D1
blastp_pdb 2w96_A 60 254 + 195 Gaps:18 71.22 271 29.53 5e-09 mol:protein length:271 G1/S-SPECIFIC CYCLIN-D1
blastp_pdb 2w9z_A 110 254 + 145 Gaps:9 53.70 257 31.88 7e-09 mol:protein length:257 G1/S-SPECIFIC CYCLIN-D1
blastp_pdb 2g9x_D 102 260 + 159 Gaps:26 57.63 262 37.09 2e-08 mol:protein length:262 Cyclin-A2
blastp_pdb 2g9x_B 102 260 + 159 Gaps:26 57.63 262 37.09 2e-08 mol:protein length:262 Cyclin-A2
blastp_pdb 3tnw_D 102 260 + 159 Gaps:26 57.63 262 37.09 2e-08 mol:protein length:262 Cyclin-A2
blastp_pdb 3tnw_B 102 260 + 159 Gaps:26 57.63 262 37.09 2e-08 mol:protein length:262 Cyclin-A2
blastp_pdb 3my5_D 102 260 + 159 Gaps:26 57.63 262 37.09 2e-08 mol:protein length:262 Cyclin-A2
blastp_pdb 3my5_B 102 260 + 159 Gaps:26 57.63 262 37.09 2e-08 mol:protein length:262 Cyclin-A2
blastp_uniprot_sprot sp|P42751|CCD11_ARATH 11 291 + 281 Gaps:54 75.81 339 43.19 1e-48 Cyclin-D1-1 OS Arabidopsis thaliana GN CYCD1-1 PE 1 SV 3
blastp_uniprot_sprot sp|Q8LGA1|CCD41_ARATH 41 291 + 251 Gaps:38 75.00 308 44.16 2e-47 Cyclin-D4-1 OS Arabidopsis thaliana GN CYCD4-1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8H339|CCD12_ORYSJ 66 292 + 227 Gaps:40 58.47 354 46.86 4e-45 Cyclin-D1-2 OS Oryza sativa subsp. japonica GN CYCD1-2 PE 3 SV 2
blastp_uniprot_sprot sp|Q6YXH8|CCD41_ORYSJ 35 332 + 298 Gaps:46 76.97 356 40.51 2e-44 Cyclin-D4-1 OS Oryza sativa subsp. japonica GN CYCD4-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q69QB8|CCD31_ORYSJ 36 331 + 296 Gaps:50 81.29 342 39.93 3e-44 Cyclin-D3-1 OS Oryza sativa subsp. japonica GN CYCD3-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q0J233|CCD21_ORYSJ 45 292 + 248 Gaps:49 69.81 308 45.12 3e-43 Cyclin-D2-1 OS Oryza sativa subsp. japonica GN CYCD2-1 PE 3 SV 2
blastp_uniprot_sprot sp|Q4KYM5|CCD42_ORYSJ 39 312 + 274 Gaps:38 65.27 383 40.80 3e-43 Cyclin-D4-2 OS Oryza sativa subsp. japonica GN CYCD4-2 PE 2 SV 2
blastp_uniprot_sprot sp|Q67V81|CCD11_ORYSJ 110 308 + 199 Gaps:22 56.47 363 43.41 2e-42 Cyclin-D1-1 OS Oryza sativa subsp. japonica GN CYCD1-1 PE 3 SV 1
blastp_uniprot_sprot sp|P42752|CCD21_ARATH 44 318 + 275 Gaps:48 71.75 361 39.77 1e-41 Cyclin-D2-1 OS Arabidopsis thaliana GN CYCD2-1 PE 1 SV 3
blastp_uniprot_sprot sp|Q0WQN9|CCD42_ARATH 5 292 + 288 Gaps:36 86.58 298 39.53 3e-41 Cyclin-D4-2 OS Arabidopsis thaliana GN CYCD4-2 PE 1 SV 2

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 206 293 88 PF02984 none Cyclin, C-terminal domain IPR004367
Gene3D 197 265 69 G3DSA:1.10.472.10 none none IPR013763
PANTHER 110 292 183 PTHR10177 none none none
SUPERFAMILY 110 202 93 SSF47954 none none IPR013763
Phobius 118 334 217 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 109 202 94 PF00134 none Cyclin, N-terminal domain IPR006671
Phobius 1 93 93 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 75 196 122 G3DSA:1.10.472.10 none none IPR013763
PANTHER 110 292 183 PTHR10177:SF191 none none IPR031093
SMART 108 196 89 SM00385 none domain present in cyclins, TFIIB and Retinoblastoma IPR013763
SUPERFAMILY 187 306 120 SSF47954 none none IPR013763
Phobius 94 117 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 94 116 22

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting