Protein : Qrob_P0413550.2 Q. robur
Protein Identifier  ? Qrob_P0413550.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=5) PTHR10177//PTHR10177:SF166 - CYCLINE // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 186  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0051726 regulation of cell cycle Any process that modulates the rate or extent of progression through the cell cycle.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101290702 3 183 + 181 Gaps:32 63.96 333 46.95 7e-54 cyclin-D5-1-like
blastp_kegg lcl|pper:PRUPE_ppa008396mg 3 184 + 182 Gaps:28 63.06 333 50.00 3e-53 hypothetical protein
blastp_kegg lcl|pop:POPTR_0007s09820g 6 184 + 179 Gaps:31 62.31 337 50.48 3e-52 cyclin family protein
blastp_kegg lcl|pmum:103336861 3 184 + 182 Gaps:28 63.06 333 48.57 3e-51 cyclin-D5-1
blastp_kegg lcl|cic:CICLE_v10026015mg 3 173 + 171 Gaps:27 74.16 267 50.51 6e-50 hypothetical protein
blastp_kegg lcl|pxb:103967754 3 183 + 181 Gaps:26 62.92 329 47.83 1e-49 cyclin-D5-1
blastp_kegg lcl|mdm:103401501 3 183 + 181 Gaps:26 62.92 329 47.34 2e-49 cyclin-D5-1-like
blastp_kegg lcl|vvi:100854424 6 174 + 169 Gaps:29 73.33 270 48.48 2e-48 cyclin-D5-1-like
blastp_kegg lcl|cit:102606606 3 173 + 171 Gaps:27 58.75 337 50.00 2e-48 cyclin-D5-1-like
blastp_kegg lcl|gmx:100780266 7 175 + 169 Gaps:20 60.58 312 48.15 3e-47 cyclin-D5-1-like
blastp_uniprot_sprot sp|Q2V3B2|CCD51_ARATH 7 184 + 178 Gaps:30 63.78 323 38.35 2e-31 Cyclin-D5-1 OS Arabidopsis thaliana GN CYCD5-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q10QA2|CCD53_ORYSJ 7 139 + 133 Gaps:3 37.68 345 42.31 4e-20 Cyclin-D5-3 OS Oryza sativa subsp. japonica GN CYCD5-3 PE 2 SV 1
blastp_uniprot_sprot sp|Q6YXH8|CCD41_ORYSJ 3 111 + 109 Gaps:3 31.46 356 41.96 8e-20 Cyclin-D4-1 OS Oryza sativa subsp. japonica GN CYCD4-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q67V81|CCD11_ORYSJ 7 121 + 115 Gaps:3 32.51 363 37.29 4e-19 Cyclin-D1-1 OS Oryza sativa subsp. japonica GN CYCD1-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8H339|CCD12_ORYSJ 7 119 + 113 Gaps:11 32.77 354 42.24 4e-19 Cyclin-D1-2 OS Oryza sativa subsp. japonica GN CYCD1-2 PE 3 SV 2
blastp_uniprot_sprot sp|Q8LGA1|CCD41_ARATH 7 117 + 111 Gaps:4 37.34 308 40.00 5e-19 Cyclin-D4-1 OS Arabidopsis thaliana GN CYCD4-1 PE 1 SV 2
blastp_uniprot_sprot sp|P42752|CCD21_ARATH 7 109 + 103 Gaps:3 28.81 361 39.42 1e-18 Cyclin-D2-1 OS Arabidopsis thaliana GN CYCD2-1 PE 1 SV 3
blastp_uniprot_sprot sp|P42751|CCD11_ARATH 7 117 + 111 Gaps:3 33.63 339 40.35 4e-18 Cyclin-D1-1 OS Arabidopsis thaliana GN CYCD1-1 PE 1 SV 3
blastp_uniprot_sprot sp|Q0WQN9|CCD42_ARATH 7 117 + 111 Gaps:4 38.59 298 39.13 1e-17 Cyclin-D4-2 OS Arabidopsis thaliana GN CYCD4-2 PE 1 SV 2
blastp_uniprot_sprot sp|Q0DQA9|CCD51_ORYSJ 5 137 + 133 Gaps:4 37.33 367 40.15 1e-17 Cyclin-D5-1 OS Oryza sativa subsp. japonica GN CYCD5-1 PE 2 SV 2
rpsblast_kog gnl|CDD|35875 4 122 + 119 Gaps:5 36.42 335 38.52 1e-23 KOG0656 KOG0656 KOG0656 G1/S-specific cyclin D [Cell cycle control cell division chromosome partitioning].

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 45 125 81 SSF47954 none none IPR013763
Phobius 34 185 152 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 7 120 114 PTHR10177 none none none
Gene3D 7 55 49 G3DSA:1.10.472.10 none none IPR013763
Phobius 1 33 33 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 7 120 114 PTHR10177:SF166 none none IPR031093
Phobius 22 33 12 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 64 122 59 PF02984 none Cyclin, C-terminal domain IPR004367
SUPERFAMILY 5 61 57 SSF47954 none none IPR013763
Pfam 7 61 55 PF00134 none Cyclin, N-terminal domain IPR006671
Gene3D 56 120 65 G3DSA:1.10.472.10 none none IPR013763
Phobius 11 21 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 10 10 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

2 Localization

Analysis Start End Length
SignalP_EUK 1 20 19
SignalP_GRAM_NEGATIVE 1 20 19

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting