Protein : Qrob_P0413310.2 Q. robur
Protein Identifier  ? Qrob_P0413310.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR14379:SF7 - EMB|CAB71865.1-RELATED (PTHR14379:SF7) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 676  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005777 peroxisome A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.
GO:0010468 regulation of gene expression Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_004925 16 675 + 660 Gaps:66 96.39 664 66.41 0.0 Endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain putative isoform 1
blastp_kegg lcl|pper:PRUPE_ppa002605mg 4 672 + 669 Gaps:81 99.23 653 66.20 0.0 hypothetical protein
blastp_kegg lcl|pmum:103327268 4 675 + 672 Gaps:76 99.69 652 66.46 0.0 uncharacterized LOC103327268
blastp_kegg lcl|mdm:103405961 9 662 + 654 Gaps:78 98.60 641 65.51 0.0 uncharacterized LOC103405961
blastp_kegg lcl|pxb:103953079 4 674 + 671 Gaps:75 99.54 655 65.34 0.0 uncharacterized LOC103953079
blastp_kegg lcl|pxb:103933547 9 662 + 654 Gaps:75 98.59 640 64.50 0.0 uncharacterized LOC103933547
blastp_kegg lcl|vvi:100253767 2 675 + 674 Gaps:76 100.00 640 64.22 0.0 uncharacterized LOC100253767
blastp_kegg lcl|cit:102623994 2 672 + 671 Gaps:98 99.06 635 62.96 0.0 hypothetical protein
blastp_kegg lcl|cmo:103503825 23 673 + 651 Gaps:102 96.99 665 58.29 0.0 uncharacterized LOC103503825
blastp_kegg lcl|rcu:RCOM_1343910 4 664 + 661 Gaps:76 99.68 627 59.04 0.0 hypothetical protein
blastp_uniprot_sprot sp|E1BZ85|MARF1_CHICK 31 178 + 148 Gaps:3 8.44 1741 28.57 2e-11 Meiosis arrest female protein 1 homolog OS Gallus gallus GN MARF1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9Y4F3|MARF1_HUMAN 31 178 + 148 Gaps:3 8.44 1742 28.57 4e-11 Meiosis arrest female protein 1 OS Homo sapiens GN KIAA0430 PE 1 SV 6
blastp_uniprot_sprot sp|E1BP74|MARF1_BOVIN 31 178 + 148 Gaps:3 8.44 1742 28.57 5e-11 Meiosis arrest female protein 1 OS Bos taurus GN MARF1 PE 3 SV 2
blastp_uniprot_sprot sp|Q8VIG2|MARF1_RAT 31 178 + 148 Gaps:3 8.47 1735 28.57 5e-11 Meiosis arrest female protein 1 OS Rattus norvegicus GN Marf1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8BJ34|MARF1_MOUSE 31 178 + 148 Gaps:3 8.50 1730 28.57 6e-11 Meiosis arrest female protein 1 OS Mus musculus GN Marf1 PE 1 SV 3
blastp_uniprot_sprot sp|B2GUN4|MARF1_XENTR 31 178 + 148 Gaps:3 8.74 1681 27.21 3e-10 Meiosis arrest female protein 1 homolog OS Xenopus tropicalis GN marf1 PE 2 SV 1
rpsblast_cdd gnl|CDD|199896 28 171 + 144 Gaps:1 100.00 145 57.24 2e-56 cd10910 limkain_b1_N_like N-terminal LabA-like domain of limkain b1 and similar proteins. This eukaryotic subfamily of LabA-like domains contains the N-terminal domain of human limkain b1 a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures. Limkain b1 contains multiple copies of LOTUS domains and a conserved RNA recognition motif its - and similar - domain architectures are shared by several members of this family and a function of these architectures in RNA binding or RNA metabolism has been suggested. The function of the N-terminal domain is unknown. LabA_like domains exhibit some similarity to the NYN domain a distant relative of the PIN-domain nucleases.
rpsblast_cdd gnl|CDD|202054 28 167 + 140 Gaps:12 97.87 141 36.23 2e-29 pfam01936 NYN NYN domain. These domains are found in the eukaryotic proteins typified by the Nedd4-binding protein 1 and the bacterial YacP-like proteins (Nedd4-BP1 YacP nucleases NYN domains). The NYN domain shares a common protein fold with two other previously characterized groups of nucleases namely the PIN (PilT N-terminal) and FLAP/5' --> 3' exonuclease superfamilies. These proteins share a common set of 4 acidic conserved residues that are predicted to constitute their active site. Based on the conservation of the acidic residues and structural elements Aravind and colleagues suggest that PIN and NYN domains are likely to bind only a single metal ion unlike the FLAP/5' --> 3' exonuclease superfamily which binds two metal ions. Based on conserved gene neighborhoods Aravind and colleagues infer that the bacterial members are likely to be components of the processome/degradsome that process tRNAs or ribosomal RNAs.

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 20 186 167 PTHR14379 none none IPR024768
Pfam 28 164 137 PF01936 none NYN domain IPR021139
Gene3D 27 167 141 G3DSA:3.40.50.1010 none none IPR029060
PANTHER 20 186 167 PTHR14379:SF7 none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting