Protein : Qrob_P0412650.2 Q. robur
Protein Identifier  ? Qrob_P0412650.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=8) PTHR11654:SF58 - OS04G0491200 PROTEIN Gene Prediction Quality  validated
Protein length 

Sequence

Length: 590  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0006857 oligopeptide transport The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s18640g 1 586 + 586 Gaps:5 97.99 597 71.62 0.0 POPTRDRAFT_751814 hypothetical protein
blastp_kegg lcl|cit:102620302 11 587 + 577 Gaps:5 95.25 611 67.87 0.0 probable peptide transporter At1g52190-like
blastp_kegg lcl|cic:CICLE_v10025189mg 11 587 + 577 Gaps:5 95.25 611 67.70 0.0 hypothetical protein
blastp_kegg lcl|vvi:100241176 26 588 + 563 none 96.40 584 69.27 0.0 probable peptide transporter At1g52190-like
blastp_kegg lcl|tcc:TCM_028817 1 588 + 588 Gaps:11 96.03 605 66.61 0.0 Major facilitator superfamily protein
blastp_kegg lcl|rcu:RCOM_1493010 1 587 + 587 Gaps:6 96.24 612 65.53 0.0 nitrate transporter putative
blastp_kegg lcl|sly:101245334 11 586 + 576 Gaps:9 95.64 597 62.35 0.0 probable peptide transporter At1g52190-like
blastp_kegg lcl|csv:101218304 10 581 + 572 Gaps:1 94.24 608 61.61 0.0 probable peptide transporter At1g52190-like
blastp_kegg lcl|sot:102593188 26 580 + 555 Gaps:14 92.65 599 63.24 0.0 probable peptide transporter At1g52190-like
blastp_kegg lcl|ath:AT1G52190 26 588 + 563 Gaps:6 93.74 607 60.98 0.0 nitrate transporter 1.11
blastp_pdb 2xut_C 35 524 + 490 Gaps:109 86.83 524 26.59 3e-16 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_pdb 2xut_B 35 524 + 490 Gaps:109 86.83 524 26.59 3e-16 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_pdb 2xut_A 35 524 + 490 Gaps:109 86.83 524 26.59 3e-16 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_uniprot_sprot sp|Q9M817|PTR6_ARATH 26 588 + 563 Gaps:6 93.74 607 60.98 0.0 Protein NRT1/ PTR FAMILY 1.2 OS Arabidopsis thaliana GN NPF1.2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8LPL2|PTR32_ARATH 12 587 + 576 Gaps:6 98.14 591 58.10 0.0 Protein NRT1/ PTR FAMILY 1.1 OS Arabidopsis thaliana GN NPF1.1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8RX77|PTR21_ARATH 16 567 + 552 Gaps:15 88.87 620 37.21 4e-128 Protein NRT1/ PTR FAMILY 2.13 OS Arabidopsis thaliana GN NPF2.13 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SX20|PTR18_ARATH 6 589 + 584 Gaps:20 98.32 596 37.03 4e-125 Protein NRT1/ PTR FAMILY 3.1 OS Arabidopsis thaliana GN NPF3.1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LFX9|PTR13_ARATH 20 588 + 569 Gaps:26 96.70 576 36.27 6e-117 Protein NRT1/ PTR FAMILY 2.12 OS Arabidopsis thaliana GN NPF2.12 PE 1 SV 2
blastp_uniprot_sprot sp|Q93Z20|PTR17_ARATH 24 563 + 540 Gaps:22 90.51 590 38.01 2e-115 Protein NRT1/ PTR FAMILY 8.5 OS Arabidopsis thaliana GN NPF8.5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LV10|PTR53_ARATH 8 588 + 581 Gaps:25 94.48 616 35.40 3e-115 Protein NRT1/ PTR FAMILY 2.11 OS Arabidopsis thaliana GN NPF2.11 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M9V7|PTR8_ARATH 1 567 + 567 Gaps:26 95.91 587 36.59 5e-115 Protein NRT1/ PTR FAMILY 2.9 OS Arabidopsis thaliana GN NPF2.9 PE 1 SV 1
blastp_uniprot_sprot sp|P46032|PTR2_ARATH 24 561 + 538 Gaps:17 91.79 585 36.87 4e-113 Protein NRT1/ PTR FAMILY 8.3 OS Arabidopsis thaliana GN NPF8.3 PE 1 SV 1
blastp_uniprot_sprot sp|Q944G5|PTR44_ARATH 35 567 + 533 Gaps:19 84.59 636 37.17 2e-112 Protein NRT1/ PTR FAMILY 2.10 OS Arabidopsis thaliana GN NPF2.10 PE 1 SV 3
rpsblast_cdd gnl|CDD|144446 100 506 + 407 Gaps:45 100.00 372 30.38 1e-46 pfam00854 PTR2 POT family. The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters.
rpsblast_cdd gnl|CDD|32918 38 551 + 514 Gaps:75 90.16 498 19.38 3e-24 COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|162112 56 438 + 383 Gaps:82 50.61 654 27.79 6e-19 TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics the antitumor agent bestatin and various protease inhibitors).
rpsblast_kog gnl|CDD|36451 1 574 + 574 Gaps:20 99.82 571 38.77 1e-140 KOG1237 KOG1237 KOG1237 H+/oligopeptide symporter [Amino acid transport and metabolism].

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 25 589 565 PTHR11654:SF58 none none none
Phobius 415 436 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 100 503 404 PF00854 "Reactome:REACT_15518","Reactome:REACT_19419" POT family IPR000109
Phobius 517 543 27 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 100 123 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 375 395 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 89 113 25 PS01022 "Reactome:REACT_15518","Reactome:REACT_19419" PTR2 family proton/oligopeptide symporters signature 1. IPR018456
Phobius 222 244 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 478 496 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 171 190 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 56 244 189 G3DSA:1.20.1250.20 none none none
Phobius 191 210 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 456 477 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 25 589 565 PTHR11654 "Reactome:REACT_15518","Reactome:REACT_19419";signature_desc=OLIGOPEPTIDE TRANSPORTER-RELATED none IPR000109
Phobius 396 414 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 544 562 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 563 589 27 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 211 221 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 245 374 130 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 124 142 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 437 455 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 63 73 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 326 565 240 SSF103473 none none IPR020846
SUPERFAMILY 48 251 204 SSF103473 none none IPR020846
Phobius 74 93 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 43 43 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 497 516 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 94 99 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 143 170 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 44 62 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

11 Localization

Analysis Start End Length
TMHMM 222 244 22
TMHMM 372 394 22
TMHMM 460 482 22
TMHMM 190 212 22
TMHMM 148 170 22
TMHMM 74 93 19
TMHMM 544 566 22
TMHMM 497 516 19
TMHMM 47 69 22
TMHMM 414 436 22
TMHMM 100 122 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting