Protein : Qrob_P0410110.2 Q. robur
Protein Identifier  ? Qrob_P0410110.2 Organism . Name  Quercus robur
Score  95.2 Score Type  egn
Protein Description  (M=2) 2.7.7.38 - 3-deoxy-manno-octulosonate cytidylyltransferase. Code Enzyme  EC:2.7.7.38
Gene Prediction Quality  validated Protein length 

Sequence

Length: 293  
Kegg Orthology  K00979
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0008690 3-deoxy-manno-octulosonate cytidylyltransferase activity Catalysis of the reaction: CTP + 3-deoxy-D-manno-octulosonate = diphosphate + CMP-3-deoxy-D-manno-octulosonate.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_031454 10 292 + 283 Gaps:2 93.36 301 82.56 2e-169 Nucleotide-diphospho-sugar transferases superfamily protein isoform 1
blastp_kegg lcl|vvi:100246238 1 292 + 292 Gaps:7 100.00 293 81.23 9e-169 3-deoxy-manno-octulosonate cytidylyltransferase-like
blastp_kegg lcl|pmum:103324765 10 292 + 283 none 95.61 296 83.39 8e-166 3-deoxy-manno-octulosonate cytidylyltransferase mitochondrial-like
blastp_kegg lcl|pper:PRUPE_ppa009339mg 10 292 + 283 none 95.61 296 83.39 9e-165 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1632840 14 291 + 278 Gaps:2 93.88 294 81.52 2e-164 cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase putative (EC:2.7.7.38)
blastp_kegg lcl|vvi:100248631 10 292 + 283 none 95.29 297 80.92 4e-164 3-deoxy-manno-octulosonate cytidylyltransferase-like
blastp_kegg lcl|pmum:103326214 11 292 + 282 Gaps:2 93.65 299 81.07 1e-163 3-deoxy-manno-octulosonate cytidylyltransferase mitochondrial
blastp_kegg lcl|pper:PRUPE_ppa009246mg 11 292 + 282 Gaps:2 93.33 300 80.71 9e-162 hypothetical protein
blastp_kegg lcl|crb:CARUB_v10009902mg 13 292 + 280 Gaps:2 95.21 292 79.14 2e-161 hypothetical protein
blastp_kegg lcl|cmo:103493332 13 292 + 280 Gaps:2 93.60 297 78.78 3e-161 3-deoxy-manno-octulosonate cytidylyltransferase mitochondrial
blastp_pdb 3oam_D 50 289 + 240 Gaps:7 97.22 252 42.45 5e-52 mol:protein length:252 3-deoxy-manno-octulosonate cytidylyltransfera
blastp_pdb 3oam_C 50 289 + 240 Gaps:7 97.22 252 42.45 5e-52 mol:protein length:252 3-deoxy-manno-octulosonate cytidylyltransfera
blastp_pdb 3oam_B 50 289 + 240 Gaps:7 97.22 252 42.45 5e-52 mol:protein length:252 3-deoxy-manno-octulosonate cytidylyltransfera
blastp_pdb 3oam_A 50 289 + 240 Gaps:7 97.22 252 42.45 5e-52 mol:protein length:252 3-deoxy-manno-octulosonate cytidylyltransfera
blastp_pdb 1vic_B 50 286 + 237 Gaps:11 93.89 262 42.28 2e-51 mol:protein length:262 3-deoxy-manno-octulosonate cytidylyltransfera
blastp_pdb 1vic_A 50 286 + 237 Gaps:11 93.89 262 42.28 2e-51 mol:protein length:262 3-deoxy-manno-octulosonate cytidylyltransfera
blastp_pdb 1vh3_C 50 286 + 237 Gaps:11 93.89 262 42.28 2e-51 mol:protein length:262 3-deoxy-manno-octulosonate cytidylyltransfera
blastp_pdb 1vh3_B 50 286 + 237 Gaps:11 93.89 262 42.28 2e-51 mol:protein length:262 3-deoxy-manno-octulosonate cytidylyltransfera
blastp_pdb 1vh3_A 50 286 + 237 Gaps:11 93.89 262 42.28 2e-51 mol:protein length:262 3-deoxy-manno-octulosonate cytidylyltransfera
blastp_pdb 3duv_B 50 286 + 237 Gaps:11 93.89 262 42.28 2e-51 mol:protein length:262 3-deoxy-manno-octulosonate cytidylyltransfera
blastp_uniprot_sprot sp|Q9C920|KDSB_ARATH 1 292 + 292 Gaps:2 100.00 290 77.93 6e-158 3-deoxy-manno-octulosonate cytidylyltransferase mitochondrial OS Arabidopsis thaliana GN KDSB PE 1 SV 1
blastp_uniprot_sprot sp|Q6MD00|KDSB_PARUW 39 290 + 252 Gaps:3 98.46 259 47.06 1e-68 3-deoxy-manno-octulosonate cytidylyltransferase OS Protochlamydia amoebophila (strain UWE25) GN kdsB PE 3 SV 1
blastp_uniprot_sprot sp|Q9PKL1|KDSB_CHLMU 45 283 + 239 Gaps:8 93.31 254 49.37 8e-65 3-deoxy-manno-octulosonate cytidylyltransferase OS Chlamydia muridarum (strain MoPn / Nigg) GN kdsB PE 3 SV 2
blastp_uniprot_sprot sp|B0BBG2|KDSB_CHLTB 45 283 + 239 Gaps:10 93.31 254 47.68 5e-62 3-deoxy-manno-octulosonate cytidylyltransferase OS Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) GN kdsB PE 3 SV 1
blastp_uniprot_sprot sp|B0B9T2|KDSB_CHLT2 45 283 + 239 Gaps:10 93.31 254 47.68 5e-62 3-deoxy-manno-octulosonate cytidylyltransferase OS Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) GN kdsB PE 3 SV 1
blastp_uniprot_sprot sp|P0CD75|KDSB_CHLTR 45 283 + 239 Gaps:10 93.31 254 47.68 6e-62 3-deoxy-manno-octulosonate cytidylyltransferase OS Chlamydia trachomatis (strain D/UW-3/Cx) GN kdsB PE 3 SV 1
blastp_uniprot_sprot sp|Q3KMI0|KDSB_CHLTA 45 283 + 239 Gaps:10 93.31 254 47.68 6e-62 3-deoxy-manno-octulosonate cytidylyltransferase OS Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) GN kdsB PE 3 SV 1
blastp_uniprot_sprot sp|A0LE62|KDSB_SYNFM 46 282 + 237 Gaps:5 95.20 250 47.06 7e-61 3-deoxy-manno-octulosonate cytidylyltransferase OS Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN kdsB PE 3 SV 1
blastp_uniprot_sprot sp|Q254V8|KDSB_CHLFF 43 283 + 241 Gaps:5 93.70 254 43.70 1e-60 3-deoxy-manno-octulosonate cytidylyltransferase OS Chlamydophila felis (strain Fe/C-56) GN kdsB PE 3 SV 1
blastp_uniprot_sprot sp|A8ZWH0|KDSB_DESOH 46 286 + 241 Gaps:4 97.18 248 42.32 3e-60 3-deoxy-manno-octulosonate cytidylyltransferase OS Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN kdsB PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Hamap 45 287 243 MF_00057 "KEGG:00540+2.7.7.38","MetaCyc:PWY-1269","MetaCyc:PWY-5111","UniPathway:UPA00030","UniPathway:UPA00358" 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. IPR004528
Gene3D 46 289 244 G3DSA:3.90.550.10 none none IPR029044
PANTHER 227 291 65 PTHR21485:SF4 "KEGG:00540+2.7.7.38","MetaCyc:PWY-1269","MetaCyc:PWY-5111","UniPathway:UPA00030","UniPathway:UPA00358";signature_desc=CMP-2-KETO-3-DEOCTULOSONATE (CMP-KDO) CYTIDYLTRANSFERASE none IPR004528
Phobius 12 35 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 49 258 210 PF02348 "KEGG:00540+2.7.7.38","MetaCyc:PWY-1269","MetaCyc:PWY-5111","UniPathway:UPA00030","UniPathway:UPA00358" Cytidylyltransferase IPR003329
Phobius 1 11 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 1 205 205 PTHR21485:SF4 "KEGG:00540+2.7.7.38","MetaCyc:PWY-1269","MetaCyc:PWY-5111","UniPathway:UPA00030","UniPathway:UPA00358";signature_desc=CMP-2-KETO-3-DEOCTULOSONATE (CMP-KDO) CYTIDYLTRANSFERASE none IPR004528
PANTHER 227 291 65 PTHR21485 none none none
PANTHER 1 205 205 PTHR21485 none none none
TIGRFAM 49 279 231 TIGR00466 "KEGG:00540+2.7.7.38","MetaCyc:PWY-1269","MetaCyc:PWY-5111","UniPathway:UPA00030","UniPathway:UPA00358" kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase IPR004528
Phobius 36 292 257 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 47 286 240 SSF53448 none none IPR029044

1 Localization

Analysis Start End Length
TMHMM 15 37 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting