Protein : Qrob_P0409890.2 Q. robur
Protein Identifier  ? Qrob_P0409890.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=44) PF00407 - Pathogenesis-related protein Bet v I family Gene Prediction Quality  validated
Protein length 

Sequence

Length: 152  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006952 defense response Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
GO:0009607 response to biotic stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103931888 2 151 + 150 none 96.77 155 66.67 1e-69 MLP-like protein 28
blastp_kegg lcl|rcu:RCOM_1115210 1 151 + 151 none 100.00 151 65.56 1e-69 Major latex protein putative
blastp_kegg lcl|pmum:103341614 5 151 + 147 Gaps:2 95.51 156 67.79 2e-69 MLP-like protein 31
blastp_kegg lcl|pper:PRUPE_ppa012742mg 5 151 + 147 Gaps:2 95.51 156 67.79 2e-69 hypothetical protein
blastp_kegg lcl|rcu:RCOM_2143600 1 151 + 151 none 100.00 151 62.91 6e-69 Major latex protein putative
blastp_kegg lcl|pmum:103321404 5 151 + 147 Gaps:2 95.51 156 67.79 2e-68 MLP-like protein 31
blastp_kegg lcl|tcc:TCM_010938 3 151 + 149 Gaps:2 96.79 156 62.91 5e-67 MLP-like protein 28
blastp_kegg lcl|fve:101304375 2 151 + 150 Gaps:1 98.69 153 64.90 9e-67 MLP-like protein 28-like
blastp_kegg lcl|pop:POPTR_0010s12110g 1 150 + 150 Gaps:2 96.20 158 65.13 2e-66 POPTRDRAFT_822077 Csf-2 family protein
blastp_kegg lcl|pper:PRUPE_ppa025363mg 1 149 + 149 none 99.33 150 61.74 5e-66 hypothetical protein
blastp_pdb 2i9y_A 2 148 + 147 Gaps:2 89.76 166 59.73 4e-64 mol:protein length:166 major latex protein-like protein 28 or MLP-li
blastp_pdb 2q3q_B 67 145 + 79 Gaps:2 66.39 122 32.10 8e-06 mol:protein length:122 Uncharacterized protein At1g24000
blastp_pdb 2q3q_A 67 145 + 79 Gaps:2 66.39 122 32.10 8e-06 mol:protein length:122 Uncharacterized protein At1g24000
blastp_pdb 1vjh_B 67 145 + 79 Gaps:2 66.39 122 32.10 8e-06 mol:protein length:122 Bet v I allergen family
blastp_pdb 1vjh_A 67 145 + 79 Gaps:2 66.39 122 32.10 8e-06 mol:protein length:122 Bet v I allergen family
blastp_uniprot_sprot sp|Q941R6|MLP31_ARATH 2 148 + 147 Gaps:2 87.13 171 58.39 1e-62 MLP-like protein 31 OS Arabidopsis thaliana GN MLP31 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SSK9|MLP28_ARATH 2 148 + 147 Gaps:4 88.96 335 59.40 2e-61 MLP-like protein 28 OS Arabidopsis thaliana GN MLP28 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SSK7|MLP34_ARATH 2 148 + 147 Gaps:4 90.82 316 57.49 2e-58 MLP-like protein 34 OS Arabidopsis thaliana GN MLP34 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SSK5|MLP43_ARATH 2 148 + 147 Gaps:2 94.30 158 57.05 2e-58 MLP-like protein 43 OS Arabidopsis thaliana GN MLP43 PE 2 SV 1
blastp_uniprot_sprot sp|P85524|KIRO_ACTDE 1 147 + 147 none 98.00 150 46.94 3e-44 Kirola OS Actinidia deliciosa PE 1 SV 1
blastp_uniprot_sprot sp|Q9C7I7|ML165_ARATH 7 148 + 142 Gaps:5 94.08 152 44.06 2e-36 MLP-like protein 165 OS Arabidopsis thaliana GN MLP165 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C7I3|ML168_ARATH 13 148 + 136 Gaps:4 90.07 151 41.91 2e-30 MLP-like protein 168 OS Arabidopsis thaliana GN MLP168 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZVF3|ML328_ARATH 1 151 + 151 Gaps:2 100.00 151 31.79 2e-22 MLP-like protein 328 OS Arabidopsis thaliana GN MLP328 PE 2 SV 1
blastp_uniprot_sprot sp|Q93VR4|ML423_ARATH 1 150 + 150 Gaps:1 97.42 155 31.13 1e-18 MLP-like protein 423 OS Arabidopsis thaliana GN MLP423 PE 2 SV 1
blastp_uniprot_sprot sp|Q06394|ML146_PAPSO 3 151 + 149 Gaps:8 93.71 159 34.23 7e-18 Major latex protein 146 OS Papaver somniferum GN MLP146 PE 2 SV 1
rpsblast_cdd gnl|CDD|144121 3 148 + 146 Gaps:1 98.00 150 49.66 1e-51 pfam00407 Bet_v_1 Pathogenesis-related protein Bet v I family. This family is named after Bet v 1 the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10) cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel alder) as plant food allergens expressed in high levels in fruits vegetables and seeds (apple celery hazelnut) and as pathogenesis-related proteins whose expression is induced by pathogen infection wounding or abiotic stress. Hyp-1 an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens.
rpsblast_cdd gnl|CDD|198105 2 148 + 147 Gaps:1 98.01 151 50.68 2e-50 smart01037 Bet_v_1 Pathogenesis-related protein Bet v I family. This family is named after Bet v 1 the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10) cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10.- Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel alder) as plant food allergens expressed in high levels in fruits vegetables and seeds (apple celery hazelnut) and as pathogenesis-related proteins whose expression is induced by pathogen infection wounding or abiotic stress. Hyp-1 an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens.
rpsblast_cdd gnl|CDD|176858 5 148 + 144 Gaps:3 97.97 148 36.55 6e-33 cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa) Bet v 1 and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch Betula verrucosa) and related proteins. In addition to birch Bet v 1 this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins norcoclaurine synthases (NCSs) cytokinin binding proteins (CSBPs) major latex proteins (MLPs) and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids cytokinins flavonoids and fatty acids. Hyp-1 a PR-10 from Hypericum perforatum/St. John's wort catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear however they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup including Bet v 1 have in vitro RNase activity the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome.
rpsblast_cdd gnl|CDD|176863 6 121 + 116 Gaps:9 77.86 140 31.19 5e-07 cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1) PYR1-like (PYL) regulatory component of abscisic acid receptors (RCARs) and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone which regulates plant growth development and response to environmental stresses. Upon binding ABA these plant proteins interact with a type 2C protein phosphatase (PP2C) such as ABI1 and ABI2 and inhibit their activity. When ABA is bound a loop (designated the gate/CL2 loop) closes over the ligand binding pocket resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol and a lower rate of respiration with methanol.
rpsblast_cdd gnl|CDD|204528 6 121 + 116 Gaps:10 75.71 140 24.53 7e-07 pfam10604 Polyketide_cyc2 Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 148 148 PTHR31907 none none none
SMART 2 151 150 SM01037 none Pathogenesis-related protein Bet v I family IPR024948
Gene3D 1 150 150 G3DSA:3.30.530.20 none none IPR023393
Pfam 2 150 149 PF00407 none Pathogenesis-related protein Bet v I family IPR000916
SUPERFAMILY 1 35 35 SSF55961 none none none
SUPERFAMILY 69 150 82 SSF55961 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting