Protein : Qrob_P0409830.2 Q. robur
Protein Identifier  ? Qrob_P0409830.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K14494 - DELLA protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 632  
Kegg Orthology  K14494
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0000989 transcription factor binding transcription factor activity Interacting selectively and non-covalently with a specific transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_010965 1 625 + 625 Gaps:41 99.51 615 78.10 0.0 GRAS family transcription factor family protein
blastp_kegg lcl|pop:POPTR_0008s13090g 1 622 + 622 Gaps:59 98.83 600 78.92 0.0 POPTRDRAFT_719856 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s12080g 1 619 + 619 Gaps:49 98.34 602 78.04 0.0 POPTRDRAFT_566478 hypothetical protein
blastp_kegg lcl|pmum:103321409 1 618 + 618 Gaps:50 98.58 633 75.00 0.0 DELLA protein GAIP-B
blastp_kegg lcl|fve:101307885 22 620 + 599 Gaps:35 95.58 611 76.03 0.0 DELLA protein GAIP-like
blastp_kegg lcl|rcu:RCOM_0629510 1 620 + 620 Gaps:61 98.69 609 75.87 0.0 DELLA protein GAIP-B putative
blastp_kegg lcl|cmo:103504555 1 623 + 623 Gaps:61 99.32 586 77.66 0.0 DELLA protein GAIP-B
blastp_kegg lcl|pxb:103943039 1 623 + 623 Gaps:47 99.37 634 72.38 0.0 DELLA protein GAI-like
blastp_kegg lcl|csv:101204164 1 622 + 622 Gaps:61 99.15 586 77.62 0.0 della1 DELLA protein GAIP-B-like
blastp_kegg lcl|csv:101224036 1 622 + 622 Gaps:61 99.15 586 77.45 0.0 DELLA protein GAIP-B-like
blastp_pdb 2zsi_B 41 113 + 73 Gaps:1 67.27 110 70.27 1e-25 mol:protein length:110 DELLA protein GAI
blastp_pdb 2zsh_B 41 113 + 73 Gaps:1 67.27 110 70.27 1e-25 mol:protein length:110 DELLA protein GAI
blastp_uniprot_sprot sp|Q8S4W7|GAI1_VITVI 1 622 + 622 Gaps:51 98.14 590 76.34 0.0 DELLA protein GAI1 OS Vitis vinifera GN GAI1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6EI06|GAIP_CUCMA 1 622 + 622 Gaps:64 99.14 579 77.35 0.0 DELLA protein GAIP OS Cucurbita maxima GN GAIP PE 2 SV 1
blastp_uniprot_sprot sp|Q6EI05|GAIPB_CUCMA 1 623 + 623 Gaps:59 99.15 587 75.95 0.0 DELLA protein GAIP-B OS Cucurbita maxima GN GAIPB PE 2 SV 1
blastp_uniprot_sprot sp|Q5BN22|RGA2_BRACM 1 620 + 620 Gaps:74 99.48 579 72.57 0.0 DELLA protein RGA2 OS Brassica campestris GN RGA2 PE 3 SV 1
blastp_uniprot_sprot sp|Q5BN23|RGA1_BRACM 1 620 + 620 Gaps:66 99.48 573 72.98 0.0 DELLA protein RGA1 OS Brassica campestris GN RGA1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SLH3|RGA_ARATH 40 620 + 581 Gaps:64 93.87 587 72.60 0.0 DELLA protein RGA OS Arabidopsis thaliana GN RGA PE 1 SV 1
blastp_uniprot_sprot sp|Q9LQT8|GAI_ARATH 38 622 + 585 Gaps:72 97.00 533 75.44 0.0 DELLA protein GAI OS Arabidopsis thaliana GN GAI PE 1 SV 1
blastp_uniprot_sprot sp|Q7Y1B6|GAI_SOLLC 23 627 + 605 Gaps:72 96.09 588 67.79 0.0 DELLA protein GAI OS Solanum lycopersicum GN GAI PE 2 SV 1
blastp_uniprot_sprot sp|Q84TQ7|GAI_GOSHI 25 613 + 589 Gaps:86 95.16 537 72.99 0.0 DELLA protein GAI OS Gossypium hirsutum GN GAI PE 2 SV 1
blastp_uniprot_sprot sp|Q9ST48|DWRF8_MAIZE 47 619 + 573 Gaps:85 93.33 630 59.01 0.0 DELLA protein DWARF8 OS Zea mays GN D8 PE 1 SV 1
rpsblast_cdd gnl|CDD|202673 259 617 + 359 Gaps:18 99.73 372 52.29 1e-144 pfam03514 GRAS GRAS family transcription factor. Sequence analysis of the products of the GRAS (GAI RGA SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect loss of a ground tissue layer in the root. The PAT1 protein is involved in phytochrome A signal transduction.
rpsblast_cdd gnl|CDD|152476 48 121 + 74 none 100.00 74 72.97 2e-30 pfam12041 DELLA Transcriptional regulator DELLA protein N terminal. Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DELLA proteins and signals them towards 26S proteasome. The N terminal of DELLA proteins contains conserved DELLA and VHYNP motifs which are important for GID1 binding and proteolysis of the DELLA proteins.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 233 597 365 PS50985 none GRAS family profile. IPR005202
PANTHER 156 622 467 PTHR31636 none none none
PANTHER 47 129 83 PTHR31636 none none none
PANTHER 156 622 467 PTHR31636:SF7 none none IPR030006
PANTHER 47 129 83 PTHR31636:SF7 none none IPR030006
Coils 63 84 22 Coil none none none
Pfam 259 618 360 PF03514 none GRAS domain family IPR005202
Pfam 48 115 68 PF12041 none Transcriptional regulator DELLA protein N terminal IPR021914

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting