Protein : Qrob_P0400620.2 Q. robur
Protein Identifier  ? Qrob_P0400620.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PF03468//PF03470 - XS domain // XS zinc finger domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 315  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0031047 gene silencing by RNA Any process in which RNA molecules inactivate expression of target genes.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100252420 1 309 + 309 Gaps:34 54.19 633 59.77 3e-135 uncharacterized LOC100252420
blastp_kegg lcl|vvi:100257549 1 309 + 309 Gaps:41 53.67 626 60.71 3e-133 uncharacterized LOC100257549
blastp_kegg lcl|pmum:103328166 16 309 + 294 Gaps:34 51.65 635 61.59 3e-132 interaptin-like
blastp_kegg lcl|mdm:103424873 1 309 + 309 Gaps:34 54.10 634 60.06 4e-132 putative leucine-rich repeat-containing protein DDB_G0290503
blastp_kegg lcl|tcc:TCM_027414 4 309 + 306 Gaps:33 53.55 633 62.54 4e-132 XH/XS domain-containing protein
blastp_kegg lcl|pper:PRUPE_ppa002776mg 16 309 + 294 Gaps:34 51.65 635 61.28 6e-131 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10025142mg 1 309 + 309 Gaps:35 53.94 634 59.94 2e-130 hypothetical protein
blastp_kegg lcl|cit:102629124 1 309 + 309 Gaps:35 54.11 632 59.94 2e-130 myosin-10-like
blastp_kegg lcl|gmx:100798940 1 309 + 309 Gaps:40 53.58 629 59.35 3e-128 protein MLP1-like
blastp_kegg lcl|mdm:103438740 1 309 + 309 Gaps:34 54.10 634 58.02 3e-127 putative leucine-rich repeat-containing protein DDB_G0290503
rpsblast_cdd gnl|CDD|190648 96 194 + 99 Gaps:18 99.14 116 35.65 4e-21 pfam03468 XS XS domain. The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition.
rpsblast_cdd gnl|CDD|190649 42 84 + 43 none 100.00 43 74.42 1e-14 pfam03470 zf-XS XS zinc finger domain. This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 42 83 42 PF03470 none XS zinc finger domain IPR005381
Coils 222 243 22 Coil none none none
Coils 254 275 22 Coil none none none
Pfam 96 194 99 PF03468 none XS domain IPR005380
Coils 293 314 22 Coil none none none
PANTHER 4 300 297 PTHR21596:SF3 none none none
PANTHER 4 300 297 PTHR21596 none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting