Protein : Qrob_P0398690.2 Q. robur
Protein Identifier  ? Qrob_P0398690.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K03262 - translation initiation factor eIF-5 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 442  
Kegg Orthology  K03262
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0006413 translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100263898 1 434 + 434 Gaps:17 98.47 458 78.27 0.0 eukaryotic translation initiation factor 5-like
blastp_kegg lcl|pop:POPTR_0004s11110g 1 441 + 441 Gaps:11 100.00 444 78.15 0.0 eukaryotic translation initiation factor 5-2 family protein
blastp_kegg lcl|pxb:103961036 1 441 + 441 Gaps:6 100.00 439 81.78 0.0 eukaryotic translation initiation factor 5-like
blastp_kegg lcl|pop:POPTR_0004s09250g 1 441 + 441 Gaps:15 100.00 452 78.32 0.0 POPTRDRAFT_648073 eukaryotic translation initiation factor 5-2 family protein
blastp_kegg lcl|pper:PRUPE_ppa005899mg 1 441 + 441 Gaps:3 100.00 438 80.82 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_008G009700g 1 441 + 441 Gaps:5 100.00 446 77.13 0.0 hypothetical protein
blastp_kegg lcl|gmx:100792481 1 441 + 441 Gaps:3 100.00 444 75.90 0.0 eukaryotic translation initiation factor 5-like
blastp_kegg lcl|cic:CICLE_v10011756mg 1 440 + 440 Gaps:14 100.00 436 79.36 0.0 hypothetical protein
blastp_kegg lcl|cit:102616026 1 440 + 440 Gaps:14 100.00 436 79.13 0.0 eukaryotic translation initiation factor 5-like
blastp_kegg lcl|pmum:103328692 1 441 + 441 Gaps:3 100.00 438 80.59 0.0 eukaryotic translation initiation factor 5-like
blastp_pdb 2g2k_A 13 149 + 137 Gaps:1 81.18 170 57.97 8e-52 mol:protein length:170 Eukaryotic translation initiation factor 5
blastp_pdb 2e9h_A 13 149 + 137 Gaps:1 87.90 157 57.97 1e-51 mol:protein length:157 Eukaryotic translation initiation factor 5
blastp_pdb 2dcu_B 17 127 + 111 Gaps:9 70.27 148 38.46 5e-09 mol:protein length:148 Translation initiation factor 2 beta subunit
blastp_pdb 2d74_B 17 127 + 111 Gaps:9 70.27 148 38.46 5e-09 mol:protein length:148 Translation initiation factor 2 beta subunit
blastp_pdb 1nee_A 17 127 + 111 Gaps:7 75.36 138 30.77 2e-07 mol:protein length:138 Probable translation initiation factor 2 beta
blastp_uniprot_sprot sp|P48724|IF5_PHAVU 1 441 + 441 Gaps:4 100.00 443 75.40 0.0 Eukaryotic translation initiation factor 5 OS Phaseolus vulgaris GN EIF5 PE 2 SV 1
blastp_uniprot_sprot sp|P55876|IF5_MAIZE 1 439 + 439 Gaps:22 99.11 451 68.01 0.0 Eukaryotic translation initiation factor 5 OS Zea mays GN EIF5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C8F1|IF5Y_ARATH 1 441 + 441 Gaps:24 100.00 439 68.11 0.0 Probable eukaryotic translation initiation factor 5-1 OS Arabidopsis thaliana GN At1g36730 PE 2 SV 1
blastp_uniprot_sprot sp|Q9S825|IF5Z_ARATH 1 434 + 434 Gaps:23 98.17 437 65.27 0.0 Probable eukaryotic translation initiation factor 5-2 OS Arabidopsis thaliana GN At1g77840 PE 2 SV 1
blastp_uniprot_sprot sp|Q9VXK6|IF5_DROME 13 434 + 422 Gaps:37 85.56 464 34.51 1e-61 Eukaryotic translation initiation factor 5 OS Drosophila melanogaster GN eIF5 PE 1 SV 1
blastp_uniprot_sprot sp|P55010|IF5_HUMAN 13 148 + 136 Gaps:1 31.79 431 58.39 3e-50 Eukaryotic translation initiation factor 5 OS Homo sapiens GN EIF5 PE 1 SV 2
blastp_uniprot_sprot sp|Q5R4L0|IF5_PONAB 13 148 + 136 Gaps:1 31.79 431 58.39 4e-50 Eukaryotic translation initiation factor 5 OS Pongo abelii GN EIF5 PE 2 SV 1
blastp_uniprot_sprot sp|P59325|IF5_MOUSE 13 148 + 136 Gaps:1 31.93 429 58.39 4e-50 Eukaryotic translation initiation factor 5 OS Mus musculus GN Eif5 PE 1 SV 1
blastp_uniprot_sprot sp|Q07205|IF5_RAT 13 148 + 136 Gaps:1 31.93 429 58.39 5e-50 Eukaryotic translation initiation factor 5 OS Rattus norvegicus GN Eif5 PE 1 SV 1
blastp_uniprot_sprot sp|P38431|IF5_YEAST 10 431 + 422 Gaps:57 95.06 405 37.66 1e-49 Eukaryotic translation initiation factor 5 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TIF5 PE 1 SV 1
rpsblast_cdd gnl|CDD|128901 15 129 + 115 Gaps:5 100.00 110 47.27 1e-41 smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
rpsblast_cdd gnl|CDD|145177 1 131 + 131 Gaps:8 100.00 125 43.20 9e-41 pfam01873 eIF-5_eIF-2B Domain found in IF2B/IF5. This family includes the N terminus of eIF-5 and the C terminus of eIF-2 beta. This region corresponds to the whole of the archaebacterial eIF-2 beta homologue. The region contains a putative zinc binding C4 finger.
rpsblast_cdd gnl|CDD|211399 288 439 + 152 Gaps:7 100.00 157 32.48 4e-26 cd11561 W2_eIF5 C-terminal W2 domain of eukaryotic translation initiation factor 5. eIF5 functions as a GTPase acceleration protein (GAP) as well as a GDP dissociation inhibitor (GDI) during translational initiation in eukaryotes. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats.
rpsblast_cdd gnl|CDD|197767 350 434 + 85 Gaps:2 100.00 83 40.96 2e-13 smart00515 eIF5C Domain at the C-termini of GCD6 eIF-2B epsilon eIF-4 gamma and eIF-5.
rpsblast_cdd gnl|CDD|190192 361 434 + 74 Gaps:1 100.00 75 41.33 3e-12 pfam02020 W2 eIF4-gamma/eIF5/eIF2-epsilon. This domain of unknown function is found at the C-terminus of several translation initiation factors.

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 30 72 43 G3DSA:3.30.30.50 none none IPR016189
Gene3D 291 441 151 G3DSA:1.25.40.180 none none IPR016021
PANTHER 10 272 263 PTHR23001:SF7 none none none
PANTHER 289 441 153 PTHR23001:SF7 none none none
Pfam 4 129 126 PF01873 none Domain found in IF2B/IF5 IPR002735
SUPERFAMILY 98 133 36 SSF75689 none none IPR016190
SMART 15 129 115 SM00653 none domain present in translation initiation factor eIF2B and eIF5 IPR002735
SUPERFAMILY 292 435 144 SSF48371 none none IPR016024
SUPERFAMILY 10 101 92 SSF100966 none none IPR016189
Pfam 361 441 81 PF02020 none eIF4-gamma/eIF5/eIF2-epsilon IPR003307
PANTHER 10 272 263 PTHR23001 none none none
PANTHER 289 441 153 PTHR23001 none none none
SMART 350 437 88 SM00515 none Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5 IPR003307
ProSiteProfiles 280 441 162 PS51363 none W2 domain profile. IPR003307

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting