Protein : Qrob_P0398620.2 Q. robur
Protein Identifier  ? Qrob_P0398620.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR11741 - ELONGATION FACTOR TS Gene Prediction Quality  validated
Protein length 

Sequence

Length: 299  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0003746 translation elongation factor activity Functions in chain elongation during polypeptide synthesis at the ribosome.
GO:0006414 translational elongation The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1211470 33 290 + 258 Gaps:10 65.96 379 80.00 1e-130 elongation factor ts putative
blastp_kegg lcl|csv:101206762 25 290 + 266 Gaps:11 65.09 401 75.86 5e-129 elongation factor Ts mitochondrial-like
blastp_kegg lcl|cmo:103496863 25 290 + 266 Gaps:11 65.09 401 75.48 3e-128 elongation factor Ts mitochondrial
blastp_kegg lcl|pop:POPTR_0014s17060g 32 290 + 259 Gaps:11 64.45 391 77.38 5e-127 POPTRDRAFT_807701 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_004G001500g 33 290 + 258 Gaps:12 71.30 345 75.61 1e-124 hypothetical protein
blastp_kegg lcl|pmum:103328657 23 290 + 268 Gaps:12 63.61 415 77.65 7e-124 elongation factor Ts mitochondrial
blastp_kegg lcl|cam:101497569 41 290 + 250 Gaps:13 68.70 345 74.68 1e-122 elongation factor Ts mitochondrial-like
blastp_kegg lcl|crb:CARUB_v10001466mg 33 291 + 259 Gaps:9 77.88 321 71.20 1e-121 hypothetical protein
blastp_kegg lcl|brp:103833903 33 290 + 258 Gaps:8 63.29 395 71.60 2e-121 elongation factor Ts mitochondrial
blastp_kegg lcl|mdm:103444154 33 290 + 258 Gaps:9 60.29 413 77.51 1e-120 elongation factor Ts mitochondrial
blastp_pdb 1efu_D 47 286 + 240 Gaps:49 67.73 282 38.74 5e-22 mol:protein length:282 ELONGATION FACTOR TS
blastp_pdb 1efu_B 47 286 + 240 Gaps:49 67.73 282 38.74 5e-22 mol:protein length:282 ELONGATION FACTOR TS
blastp_pdb 1aip_H 44 206 + 163 Gaps:32 95.41 196 36.36 7e-22 mol:protein length:196 ELONGATION FACTOR TS
blastp_pdb 1aip_G 44 206 + 163 Gaps:32 95.41 196 36.36 7e-22 mol:protein length:196 ELONGATION FACTOR TS
blastp_pdb 1aip_D 44 206 + 163 Gaps:32 95.41 196 36.36 7e-22 mol:protein length:196 ELONGATION FACTOR TS
blastp_pdb 1aip_C 44 206 + 163 Gaps:32 95.41 196 36.36 7e-22 mol:protein length:196 ELONGATION FACTOR TS
blastp_pdb 3mmp_C 47 286 + 240 Gaps:49 28.17 678 36.65 5e-21 mol:protein length:678 Elongation factor Tu 2 Elongation factor Ts
blastp_pdb 3mmp_A 47 286 + 240 Gaps:49 28.17 678 36.65 5e-21 mol:protein length:678 Elongation factor Tu 2 Elongation factor Ts
blastp_pdb 3avy_A 47 286 + 240 Gaps:49 14.82 1289 36.65 1e-20 mol:protein length:1289 Elongation factor Ts Elongation factor Tu L
blastp_pdb 3avx_A 47 286 + 240 Gaps:49 14.82 1289 36.65 1e-20 mol:protein length:1289 Elongation factor Ts Elongation factor Tu L
blastp_uniprot_sprot sp|B9SEZ6|EFTS_RICCO 33 290 + 258 Gaps:10 65.96 379 80.00 4e-132 Elongation factor Ts mitochondrial OS Ricinus communis GN EFTS PE 3 SV 1
blastp_uniprot_sprot sp|Q5XF75|EFTS_ARATH 33 290 + 258 Gaps:9 63.54 395 71.31 1e-121 Elongation factor Ts mitochondrial OS Arabidopsis thaliana GN EFTS PE 2 SV 1
blastp_uniprot_sprot sp|Q6ZJS7|EFTS_ORYSJ 3 290 + 288 Gaps:14 75.96 366 61.15 2e-110 Elongation factor Ts mitochondrial OS Oryza sativa subsp. japonica GN EFTS PE 2 SV 1
blastp_uniprot_sprot sp|B4FHF0|EFTS_MAIZE 33 293 + 261 Gaps:12 65.70 379 65.86 1e-108 Elongation factor Ts mitochondrial OS Zea mays GN EFTS PE 2 SV 1
blastp_uniprot_sprot sp|B8BAI9|EFTS_ORYSI 33 290 + 258 Gaps:13 64.16 385 65.99 4e-108 Elongation factor Ts mitochondrial OS Oryza sativa subsp. indica GN EFTS PE 3 SV 2
blastp_uniprot_sprot sp|B2V4F5|EFTS_CLOBA 49 294 + 246 Gaps:32 70.63 303 46.26 4e-38 Elongation factor Ts OS Clostridium botulinum (strain Alaska E43 / Type E3) GN tsf PE 3 SV 1
blastp_uniprot_sprot sp|B2TJ41|EFTS_CLOBB 49 294 + 246 Gaps:32 70.63 303 46.26 9e-38 Elongation factor Ts OS Clostridium botulinum (strain Eklund 17B / Type B) GN tsf PE 3 SV 1
blastp_uniprot_sprot sp|Q3YRV3|EFTS_EHRCJ 49 291 + 243 Gaps:29 74.31 288 42.06 6e-37 Elongation factor Ts OS Ehrlichia canis (strain Jake) GN tsf PE 3 SV 1
blastp_uniprot_sprot sp|Q92B02|EFTS_LISIN 48 294 + 247 Gaps:39 71.43 294 44.76 2e-36 Elongation factor Ts OS Listeria innocua serovar 6a (strain CLIP 11262) GN tsf PE 3 SV 1
blastp_uniprot_sprot sp|B8DFR4|EFTS_LISMH 48 294 + 247 Gaps:39 71.43 294 44.76 2e-36 Elongation factor Ts OS Listeria monocytogenes serotype 4a (strain HCC23) GN tsf PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 294 294 PTHR11741 none none IPR001816
Gene3D 98 137 40 G3DSA:3.30.479.20 none none IPR014039
ProSitePatterns 119 129 11 PS01127 none Elongation factor Ts signature 2. IPR018101
SUPERFAMILY 46 95 50 SSF46934 none none IPR009060
SUPERFAMILY 95 207 113 SSF54713 none none IPR014039
SUPERFAMILY 255 291 37 SSF54713 none none IPR014039
SUPERFAMILY 98 136 39 SSF54713 none none IPR014039
SUPERFAMILY 206 271 66 SSF54713 none none IPR014039
Gene3D 47 95 49 G3DSA:1.10.8.10 none none none
Pfam 97 293 197 PF00889 none Elongation factor TS IPR014039
Pfam 48 77 30 PF00627 none UBA/TS-N domain IPR000449
Gene3D 218 283 66 G3DSA:3.30.479.20 none none IPR014039

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting