Protein : Qrob_P0396640.2 Q. robur
Protein Identifier  ? Qrob_P0396640.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=2) K12402 - AP-4 complex subunit mu-1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 288  
Kegg Orthology  K12402
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0030131 clathrin adaptor complex A membrane coat adaptor complex that links clathrin to a membrane.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102624963 10 287 + 278 Gaps:5 60.53 451 80.22 2e-159 AP-4 complex subunit mu-like
blastp_kegg lcl|cic:CICLE_v10001124mg 10 287 + 278 Gaps:5 60.53 451 80.22 3e-159 hypothetical protein
blastp_kegg lcl|pmum:103319509 10 287 + 278 Gaps:5 60.53 451 80.22 8e-158 AP-4 complex subunit mu
blastp_kegg lcl|pper:PRUPE_ppa005100mg 10 287 + 278 Gaps:5 57.23 477 80.22 1e-157 hypothetical protein
blastp_kegg lcl|tcc:TCM_034244 10 287 + 278 Gaps:5 60.53 451 79.85 5e-157 Clathrin adaptor complexes medium subunit family protein isoform 1
blastp_kegg lcl|cmo:103503915 10 287 + 278 Gaps:5 60.53 451 78.75 2e-156 AP-4 complex subunit mu
blastp_kegg lcl|vvi:100254067 10 287 + 278 Gaps:5 60.53 451 78.02 6e-155 AP-4 complex subunit mu-1-like
blastp_kegg lcl|rcu:RCOM_1039340 10 287 + 278 Gaps:6 65.08 421 79.20 8e-155 AP-4 complex subunit mu-1 putative
blastp_kegg lcl|csv:101220143 10 287 + 278 Gaps:5 60.53 451 78.39 1e-154 AP-4 complex subunit mu-1-like
blastp_kegg lcl|fve:101293589 10 287 + 278 Gaps:5 60.53 451 78.75 4e-154 AP-4 complex subunit mu-1-like
blastp_pdb 1w63_V 20 286 + 267 Gaps:22 57.92 423 36.73 1e-44 mol:protein length:423 ADAPTOR-RELATED PROTEIN COMPLEX 1 MU 1 SUBUN
blastp_pdb 1w63_R 20 286 + 267 Gaps:22 57.92 423 36.73 1e-44 mol:protein length:423 ADAPTOR-RELATED PROTEIN COMPLEX 1 MU 1 SUBUN
blastp_pdb 1w63_P 20 286 + 267 Gaps:22 57.92 423 36.73 1e-44 mol:protein length:423 ADAPTOR-RELATED PROTEIN COMPLEX 1 MU 1 SUBUN
blastp_pdb 1w63_O 20 286 + 267 Gaps:22 57.92 423 36.73 1e-44 mol:protein length:423 ADAPTOR-RELATED PROTEIN COMPLEX 1 MU 1 SUBUN
blastp_pdb 1w63_N 20 286 + 267 Gaps:22 57.92 423 36.73 1e-44 mol:protein length:423 ADAPTOR-RELATED PROTEIN COMPLEX 1 MU 1 SUBUN
blastp_pdb 1w63_M 20 286 + 267 Gaps:22 57.92 423 36.73 1e-44 mol:protein length:423 ADAPTOR-RELATED PROTEIN COMPLEX 1 MU 1 SUBUN
blastp_pdb 1hes_A 20 286 + 267 Gaps:17 89.82 285 33.59 1e-43 mol:protein length:285 CLATHRIN COAT ASSEMBLY PROTEIN AP50
blastp_pdb 1bxx_A 20 286 + 267 Gaps:17 89.82 285 33.59 1e-43 mol:protein length:285 PROTEIN (AP50)
blastp_pdb 1h6e_A 20 286 + 267 Gaps:17 88.89 288 33.59 1e-43 mol:protein length:288 CLATHRIN COAT ASSEMBLY PROTEIN AP50
blastp_pdb 3h85_A 20 286 + 267 Gaps:17 85.62 299 33.59 2e-43 mol:protein length:299 AP-2 complex subunit mu-1
blastp_uniprot_sprot sp|Q9SB50|AP4M_ARATH 10 287 + 278 Gaps:6 60.31 451 78.31 3e-151 AP-4 complex subunit mu OS Arabidopsis thaliana GN AP4M PE 1 SV 1
blastp_uniprot_sprot sp|O23140|AP2M_ARATH 19 286 + 268 Gaps:15 57.76 438 37.94 3e-45 AP-2 complex subunit mu OS Arabidopsis thaliana GN AP2M PE 1 SV 1
blastp_uniprot_sprot sp|P35585|AP1M1_MOUSE 20 286 + 267 Gaps:22 57.92 423 36.73 3e-44 AP-1 complex subunit mu-1 OS Mus musculus GN Ap1m1 PE 1 SV 3
blastp_uniprot_sprot sp|Q9BXS5|AP1M1_HUMAN 14 286 + 273 Gaps:31 62.88 423 34.21 3e-44 AP-1 complex subunit mu-1 OS Homo sapiens GN AP1M1 PE 1 SV 3
blastp_uniprot_sprot sp|Q2KJ81|AP1M1_BOVIN 14 286 + 273 Gaps:31 62.88 423 34.21 3e-44 AP-1 complex subunit mu-1 OS Bos taurus GN AP1M1 PE 1 SV 3
blastp_uniprot_sprot sp|Q32Q06|AP1M1_RAT 20 286 + 267 Gaps:22 57.92 423 36.73 4e-44 AP-1 complex subunit mu-1 OS Rattus norvegicus GN Ap1m1 PE 1 SV 3
blastp_uniprot_sprot sp|Q9Y6Q5|AP1M2_HUMAN 4 286 + 283 Gaps:33 64.78 423 33.21 1e-42 AP-1 complex subunit mu-2 OS Homo sapiens GN AP1M2 PE 1 SV 4
blastp_uniprot_sprot sp|Q9WVP1|AP1M2_MOUSE 4 286 + 283 Gaps:33 64.78 423 33.21 1e-42 AP-1 complex subunit mu-2 OS Mus musculus GN Ap1m2 PE 1 SV 3
blastp_uniprot_sprot sp|P35602|AP1M_CAEEL 7 287 + 281 Gaps:39 64.93 422 35.40 2e-42 AP-1 complex subunit mu-1-I OS Caenorhabditis elegans GN unc-101 PE 2 SV 2
blastp_uniprot_sprot sp|Q3SYW1|AP1M2_BOVIN 4 286 + 283 Gaps:33 64.78 423 32.85 2e-42 AP-1 complex subunit mu-2 OS Bos taurus GN AP1M2 PE 1 SV 3

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 87 114 28 PR00314 none Clathrin coat assembly protein signature IPR001392
PRINTS 156 171 16 PR00314 none Clathrin coat assembly protein signature IPR001392
Gene3D 30 172 143 G3DSA:2.60.40.1170 none none none
Pfam 30 287 258 PF00928 none Adaptor complexes medium subunit family IPR008968
PANTHER 31 287 257 PTHR11998 none none none
ProSiteProfiles 12 286 275 PS51072 none Mu homology domain (MHD) profile. IPR028565
SUPERFAMILY 30 286 257 SSF49447 none none IPR028565
PANTHER 31 287 257 PTHR11998:SF13 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran2_2002_QTL12_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 4,33 33,33 lod 6,5 9,1

0 Targeting