Protein : Qrob_P0395800.2 Q. robur
Protein Identifier  ? Qrob_P0395800.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K12194 - charged multivesicular body protein 4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 167  
Kegg Orthology  K12194
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0007034 vacuolar transport The directed movement of substances into, out of or within a vacuole.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103498351 7 166 + 160 Gaps:1 73.85 218 88.82 2e-82 vacuolar protein sorting-associated protein 32 homolog 2
blastp_kegg lcl|csv:101221920 7 166 + 160 Gaps:1 73.85 218 88.20 1e-81 vacuolar protein sorting-associated protein 32 homolog 2-like
blastp_kegg lcl|crb:CARUB_v10005703mg 7 166 + 160 Gaps:1 73.85 218 86.96 1e-80 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10009534mg 7 166 + 160 Gaps:2 81.00 200 90.74 4e-79 hypothetical protein
blastp_kegg lcl|cit:102610273 7 166 + 160 Gaps:2 73.97 219 90.74 1e-78 vacuolar protein sorting-associated protein 32 homolog 2-like
blastp_kegg lcl|gmx:100789724 7 166 + 160 Gaps:1 73.85 218 91.30 4e-78 vacuolar protein sorting-associated protein 32 homolog 2-like
blastp_kegg lcl|cam:101500717 7 166 + 160 Gaps:1 73.52 219 91.30 4e-78 vacuolar protein sorting-associated protein 32 homolog 2-like
blastp_kegg lcl|sly:101264627 7 166 + 160 Gaps:1 73.85 218 91.30 5e-78 vacuolar protein sorting-associated protein 32 homolog 2-like
blastp_kegg lcl|tcc:TCM_037724 7 166 + 160 Gaps:1 73.85 218 91.30 8e-78 Vacuolar protein sorting-associated protein 32 isoform 1
blastp_kegg lcl|pda:103702367 7 166 + 160 Gaps:1 94.15 171 88.82 8e-77 vacuolar protein sorting-associated protein 32 homolog 2-like
blastp_uniprot_sprot sp|Q9SZE4|VP322_ARATH 7 166 + 160 Gaps:2 73.97 219 83.33 7e-77 Vacuolar protein sorting-associated protein 32 homolog 2 OS Arabidopsis thaliana GN VPS32.2 PE 1 SV 1
blastp_uniprot_sprot sp|O82197|VP321_ARATH 7 166 + 160 Gaps:9 72.77 213 85.16 5e-73 Vacuolar protein sorting-associated protein 32 homolog 1 OS Arabidopsis thaliana GN VPS32.1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9P7F7|SNF7_SCHPO 3 166 + 164 Gaps:8 75.68 222 36.90 2e-24 Vacuolar-sorting protein snf7 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN snf7 PE 3 SV 1
blastp_uniprot_sprot sp|Q6BSH2|SNF7_DEBHA 3 166 + 164 Gaps:10 76.11 226 40.12 3e-24 Vacuolar-sorting protein SNF7 OS Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN SNF7 PE 3 SV 2
blastp_uniprot_sprot sp|Q5RBR3|CHMP5_PONAB 8 138 + 131 Gaps:6 60.73 219 38.35 2e-16 Charged multivesicular body protein 5 OS Pongo abelii GN CHMP5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NZZ3|CHMP5_HUMAN 8 138 + 131 Gaps:6 60.73 219 38.35 2e-16 Charged multivesicular body protein 5 OS Homo sapiens GN CHMP5 PE 1 SV 1
blastp_uniprot_sprot sp|Q4QQV8|CHMP5_RAT 8 138 + 131 Gaps:6 60.73 219 37.59 8e-16 Charged multivesicular body protein 5 OS Rattus norvegicus GN Chmp5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9D7S9|CHMP5_MOUSE 8 138 + 131 Gaps:6 60.73 219 37.59 8e-16 Charged multivesicular body protein 5 OS Mus musculus GN Chmp5 PE 2 SV 1
blastp_uniprot_sprot sp|Q5FW29|CHMP5_XENTR 8 138 + 131 Gaps:4 60.73 219 38.35 5e-15 Charged multivesicular body protein 5 OS Xenopus tropicalis GN chmp5 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DD52|CHMP5_XENLA 8 138 + 131 Gaps:4 60.73 219 38.35 1e-14 Charged multivesicular body protein 5 OS Xenopus laevis GN chmp5 PE 2 SV 1
rpsblast_cdd gnl|CDD|146145 7 134 + 128 Gaps:4 73.37 169 40.32 3e-25 pfam03357 Snf7 Snf7. This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins such as activated cell surface receptors to the lumen of the vacuole/lysosome either for degradation/downregulation or in the case of hydrolases for proper localisation requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family.
rpsblast_cdd gnl|CDD|185643 8 122 + 115 Gaps:1 54.03 211 31.58 1e-13 PTZ00464 PTZ00464 SNF-7-like protein Provisional.
rpsblast_cdd gnl|CDD|185625 12 125 + 114 Gaps:2 58.64 191 38.39 3e-10 PTZ00446 PTZ00446 vacuolar sorting protein SNF7-like Provisional.
rpsblast_kog gnl|CDD|36869 7 164 + 158 Gaps:3 71.95 221 45.28 3e-35 KOG1656 KOG1656 KOG1656 Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|36868 6 148 + 143 Gaps:5 66.97 218 28.77 1e-12 KOG1655 KOG1655 KOG1655 Protein involved in vacuolar protein sorting [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|38122 8 126 + 119 Gaps:1 27.33 439 25.00 6e-12 KOG2911 KOG2911 KOG2911 Uncharacterized conserved protein [Function unknown].
rpsblast_kog gnl|CDD|38121 8 153 + 146 Gaps:9 65.55 209 30.66 3e-09 KOG2910 KOG2910 KOG2910 Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 100 125 26 Coil none none none
PANTHER 7 166 160 PTHR22761 none none none
Coils 71 92 22 Coil none none none
PANTHER 7 166 160 PTHR22761:SF8 none none none
Pfam 7 134 128 PF03357 none Snf7 IPR005024

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting