Protein : Qrob_P0395540.2 Q. robur
Protein Identifier  ? Qrob_P0395540.2 Organism . Name  Quercus robur
Score  82.3 Score Type  egn
Protein Description  (M=1) 6.1.1.19 - Arginine--tRNA ligase. Code Enzyme  EC:6.1.1.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 552  
Kegg Orthology  K01887
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004814 arginine-tRNA ligase activity Catalysis of the reaction: ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg).
GO:0006420 arginyl-tRNA aminoacylation The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101226876 1 477 + 477 Gaps:16 79.15 590 81.80 0.0 arginine--tRNA ligase cytoplasmic-like
blastp_kegg lcl|csv:101222059 1 477 + 477 Gaps:16 79.15 590 81.80 0.0 arginine--tRNA ligase cytoplasmic-like
blastp_kegg lcl|cmo:103492270 1 477 + 477 Gaps:16 72.40 645 81.80 0.0 arginine--tRNA ligase cytoplasmic-like
blastp_kegg lcl|pop:POPTR_0002s19960g 1 477 + 477 Gaps:17 79.32 590 81.41 0.0 POPTRDRAFT_711240 arginyl-tRNA synthetase family protein
blastp_kegg lcl|rcu:RCOM_1049090 7 477 + 471 Gaps:13 77.36 592 81.44 0.0 arginyl-tRNA synthetase putative (EC:6.1.1.19)
blastp_kegg lcl|pmum:103340805 1 477 + 477 Gaps:16 71.96 649 81.37 0.0 arginine--tRNA ligase cytoplasmic-like
blastp_kegg lcl|pper:PRUPE_ppa003237mg 1 477 + 477 Gaps:16 79.15 590 81.16 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10007707mg 1 477 + 477 Gaps:16 89.98 519 80.30 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_037764 7 477 + 471 Gaps:13 70.68 648 83.41 0.0 Arginyl-tRNA synthetase class Ic isoform 1
blastp_kegg lcl|cit:102606949 1 477 + 477 Gaps:16 72.40 645 80.30 0.0 arginine--tRNA ligase cytoplasmic-like
blastp_pdb 1f7v_A 77 475 + 399 Gaps:44 63.76 607 32.56 1e-36 mol:protein length:607 ARGINYL-TRNA SYNTHETASE
blastp_pdb 1f7u_A 77 475 + 399 Gaps:44 63.76 607 32.56 1e-36 mol:protein length:607 ARGINYL-TRNA SYNTHETASE
blastp_pdb 1bs2_A 77 475 + 399 Gaps:44 63.76 607 32.56 1e-36 mol:protein length:607 PROTEIN (ARGINYL-TRNA SYNTHETASE)
blastp_pdb 2zuf_A 40 475 + 436 Gaps:116 73.45 629 24.24 4e-12 mol:protein length:629 Arginyl-tRNA synthetase
blastp_pdb 2zue_A 40 475 + 436 Gaps:116 73.45 629 24.24 4e-12 mol:protein length:629 Arginyl-tRNA synthetase
blastp_pdb 1iq0_A 36 228 + 193 Gaps:26 29.22 592 34.10 1e-11 mol:protein length:592 ARGINYL-TRNA SYNTHETASE
blastp_pdb 3gdz_D 7 111 + 105 Gaps:8 90.83 109 30.30 4e-06 mol:protein length:109 Arginyl-tRNA synthetase
blastp_pdb 3gdz_C 7 111 + 105 Gaps:8 90.83 109 30.30 4e-06 mol:protein length:109 Arginyl-tRNA synthetase
blastp_pdb 3gdz_B 7 111 + 105 Gaps:8 90.83 109 30.30 4e-06 mol:protein length:109 Arginyl-tRNA synthetase
blastp_pdb 3gdz_A 7 111 + 105 Gaps:8 90.83 109 30.30 4e-06 mol:protein length:109 Arginyl-tRNA synthetase
blastp_uniprot_sprot sp|Q8KPU9|SYR_SYNE7 11 474 + 464 Gaps:34 77.40 584 52.43 2e-148 Arginine--tRNA ligase OS Synechococcus elongatus (strain PCC 7942) GN argS PE 3 SV 2
blastp_uniprot_sprot sp|Q5N643|SYR_SYNP6 11 474 + 464 Gaps:34 77.40 584 52.43 3e-148 Arginine--tRNA ligase OS Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN argS PE 3 SV 1
blastp_uniprot_sprot sp|P40329|SYRC_RAT 7 477 + 471 Gaps:30 68.64 660 49.23 4e-143 Arginine--tRNA ligase cytoplasmic OS Rattus norvegicus GN Rars PE 1 SV 2
blastp_uniprot_sprot sp|Q8DKN4|SYR_THEEB 19 475 + 457 Gaps:33 76.03 584 51.35 2e-142 Arginine--tRNA ligase OS Thermosynechococcus elongatus (strain BP-1) GN argS PE 3 SV 1
blastp_uniprot_sprot sp|P37880|SYRC_CRIGR 7 477 + 471 Gaps:30 68.53 661 49.01 7e-142 Arginine--tRNA ligase cytoplasmic OS Cricetulus griseus GN RARS PE 2 SV 1
blastp_uniprot_sprot sp|A7YW98|SYRC_BOVIN 7 477 + 471 Gaps:30 68.64 660 48.57 3e-141 Arginine--tRNA ligase cytoplasmic OS Bos taurus GN RARS PE 2 SV 1
blastp_uniprot_sprot sp|Q5RA20|SYRC_PONAB 7 477 + 471 Gaps:28 68.64 660 48.79 1e-140 Arginine--tRNA ligase cytoplasmic OS Pongo abelii GN RARS PE 2 SV 1
blastp_uniprot_sprot sp|Q9D0I9|SYRC_MOUSE 7 477 + 471 Gaps:30 68.64 660 48.34 1e-140 Arginine--tRNA ligase cytoplasmic OS Mus musculus GN Rars PE 2 SV 2
blastp_uniprot_sprot sp|B0JLI8|SYR_MICAN 28 475 + 448 Gaps:35 74.36 585 51.49 1e-140 Arginine--tRNA ligase OS Microcystis aeruginosa (strain NIES-843) GN argS PE 3 SV 1
blastp_uniprot_sprot sp|P54136|SYRC_HUMAN 7 477 + 471 Gaps:28 68.64 660 48.57 4e-140 Arginine--tRNA ligase cytoplasmic OS Homo sapiens GN RARS PE 1 SV 2

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 10 98 89 SM01016 "KEGG:00970+6.1.1.19","Reactome:REACT_71" Arginyl tRNA synthetase N terminal dom IPR005148
Pfam 11 98 88 PF03485 "KEGG:00970+6.1.1.19","Reactome:REACT_71" Arginyl tRNA synthetase N terminal domain IPR005148
PANTHER 1 477 477 PTHR11956 "KEGG:00970+6.1.1.19","Reactome:REACT_71";signature_desc=ARGINYL-TRNA SYNTHETASE none IPR001278
SUPERFAMILY 38 111 74 SSF55190 "KEGG:00970+6.1.1.19","Reactome:REACT_71" none IPR005148
TIGRFAM 33 476 444 TIGR00456 "KEGG:00970+6.1.1.19","Reactome:REACT_71" argS: arginine--tRNA ligase IPR001278
Phobius 1 477 477 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 125 475 351 SSF52374 none none none
Phobius 478 499 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 477 477 PTHR11956:SF1 none none none
Gene3D 125 475 351 G3DSA:3.40.50.620 none none IPR014729
Gene3D 6 114 109 G3DSA:3.30.1360.70 "KEGG:00970+6.1.1.19","Reactome:REACT_71" none IPR005148
PRINTS 165 178 14 PR01038 "KEGG:00970+6.1.1.19","Reactome:REACT_71" Arginyl-tRNA synthetase signature IPR001278
PRINTS 126 141 16 PR01038 "KEGG:00970+6.1.1.19","Reactome:REACT_71" Arginyl-tRNA synthetase signature IPR001278
PRINTS 141 157 17 PR01038 "KEGG:00970+6.1.1.19","Reactome:REACT_71" Arginyl-tRNA synthetase signature IPR001278
PRINTS 308 329 22 PR01038 "KEGG:00970+6.1.1.19","Reactome:REACT_71" Arginyl-tRNA synthetase signature IPR001278
Phobius 500 551 52 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 126 470 345 PF00750 "KEGG:00970+6.1.1.19","Reactome:REACT_71" tRNA synthetases class I (R) IPR001278
ProSitePatterns 134 145 12 PS00178 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-I signature. IPR001412

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting