Protein : Qrob_P0391390.2 Q. robur
Protein Identifier  ? Qrob_P0391390.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=2) PF00646//PF03030//PF08387 - F-box domain // Inorganic H+ pyrophosphatase // FBD Gene Prediction Quality  validated
Protein length 

Sequence

Length: 632  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004427 inorganic diphosphatase activity Catalysis of the reaction: diphosphate + H(2)O = H(+) + 2 phosphate.
GO:0009678 hydrogen-translocating pyrophosphatase activity Catalysis of the hydrolysis of pyrophosphate, which generates a proton motive force.
GO:0015992 proton transport The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101292189 33 453 + 421 Gaps:68 86.13 512 31.97 1e-37 putative F-box/FBD/LRR-repeat protein At1g78760-like
blastp_kegg lcl|tcc:TCM_031423 36 454 + 419 Gaps:49 94.43 449 32.78 3e-34 F-box/RNI/FBD-like domains-containing protein putative
blastp_kegg lcl|fve:101307404 35 452 + 418 Gaps:66 97.09 447 31.80 3e-32 putative F-box/FBD/LRR-repeat protein At1g78760-like
blastp_kegg lcl|pxb:103960072 36 453 + 418 Gaps:66 96.58 439 32.78 4e-32 FBD-associated F-box protein At4g10400-like
blastp_kegg lcl|mdm:103432206 36 453 + 418 Gaps:70 96.58 439 33.02 7e-32 FBD-associated F-box protein At4g10400-like
blastp_kegg lcl|pxb:103926900 24 453 + 430 Gaps:79 99.78 456 30.99 2e-31 F-box/LRR-repeat protein At4g14103-like
blastp_kegg lcl|brp:103856930 36 453 + 418 Gaps:67 99.51 411 33.74 8e-31 FBD-associated F-box protein At5g56370
blastp_kegg lcl|mdm:103448871 26 455 + 430 Gaps:51 99.56 455 29.80 2e-30 F-box/FBD/LRR-repeat protein At5g56420-like
blastp_kegg lcl|eus:EUTSA_v10027789mg 38 454 + 417 Gaps:57 98.99 398 34.77 1e-29 hypothetical protein
blastp_kegg lcl|mdm:103448794 36 449 + 414 Gaps:69 97.69 433 32.39 1e-29 F-box/LRR-repeat protein At4g14103-like
blastp_pdb 4a01_B 510 582 + 73 Gaps:27 12.27 766 51.06 7e-17 mol:protein length:766 PROTON PYROPHOSPHATASE
blastp_pdb 4a01_A 510 582 + 73 Gaps:27 12.27 766 51.06 7e-17 mol:protein length:766 PROTON PYROPHOSPHATASE
blastp_uniprot_sprot sp|Q9FM94|FBD21_ARATH 36 453 + 418 Gaps:65 99.52 421 32.46 3e-28 FBD-associated F-box protein At5g56370 OS Arabidopsis thaliana GN At5g56370 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SCQ5|FBD10_ARATH 36 454 + 419 Gaps:69 99.77 427 34.27 2e-27 Putative FBD-associated F-box protein At3g50710 OS Arabidopsis thaliana GN At3g50710 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SV82|FBD40_ARATH 36 453 + 418 Gaps:87 99.51 409 31.20 3e-24 FBD-associated F-box protein At4g10400 OS Arabidopsis thaliana GN At4g10400 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C7M1|FBD2_ARATH 35 453 + 419 Gaps:47 98.10 422 28.26 1e-23 Putative FBD-associated F-box protein At1g55030 OS Arabidopsis thaliana GN At1g55030 PE 4 SV 1
blastp_uniprot_sprot sp|Q9LXJ6|FDL21_ARATH 36 453 + 418 Gaps:56 92.98 456 31.84 1e-23 F-box/FBD/LRR-repeat protein At3g52680 OS Arabidopsis thaliana GN At3g52680 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FJT1|FBD29_ARATH 35 451 + 417 Gaps:91 94.25 435 30.73 1e-23 Putative FBD-associated F-box protein At5g56820 OS Arabidopsis thaliana GN At5g56820 PE 4 SV 2
blastp_uniprot_sprot sp|Q9FF58|FBD30_ARATH 36 421 + 386 Gaps:71 99.23 388 33.51 1e-23 FBD-associated F-box protein At5g60610 OS Arabidopsis thaliana GN At5g60610 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FJU2|FBD37_ARATH 38 422 + 385 Gaps:59 96.98 398 30.31 8e-23 Putative FBD-associated F-box protein At5g56700 OS Arabidopsis thaliana GN At5g56700 PE 2 SV 2
blastp_uniprot_sprot sp|Q3EAE5|FDL24_ARATH 36 453 + 418 Gaps:85 99.55 441 29.61 2e-22 Putative F-box/FBD/LRR-repeat protein At4g00315 OS Arabidopsis thaliana GN At4g00315 PE 4 SV 1
blastp_uniprot_sprot sp|Q9FM89|FDL38_ARATH 36 454 + 419 Gaps:54 98.82 422 30.46 3e-22 F-box/FBD/LRR-repeat protein At5g56420 OS Arabidopsis thaliana GN At5g56420 PE 2 SV 1
rpsblast_cdd gnl|CDD|177897 510 625 + 116 Gaps:27 16.86 765 57.36 1e-22 PLN02255 PLN02255 H(+) -translocating inorganic pyrophosphatase.
rpsblast_cdd gnl|CDD|202513 493 625 + 133 Gaps:76 30.34 669 25.12 5e-16 pfam03030 H_PPase Inorganic H+ pyrophosphatase. The H+ pyrophosphatase is an transmembrane proton pump involved in establishing the H+ electrochemical potential difference between the vacuole lumen and the cell cytosol. Vacuolar-type H(+)-translocating inorganic pyrophosphatases have long been considered to be restricted to plants and to a few species of photo-trophic bacteria. However in recent investigations these pyrophosphatases have been found in organisms as disparate as thermophilic Archaea and parasitic protists.
rpsblast_cdd gnl|CDD|130174 503 625 + 123 Gaps:58 23.24 697 49.38 1e-14 TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants) archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase like H(+)-ATPase acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
rpsblast_cdd gnl|CDD|179102 499 625 + 127 Gaps:79 29.73 666 22.73 4e-11 PRK00733 hppA membrane-bound proton-translocating pyrophosphatase Validated.

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 35 77 43 G3DSA:3.80.10.10 none none none
Gene3D 113 222 110 G3DSA:3.80.10.10 none none none
Phobius 554 631 78 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 38 73 36 PF00646 none F-box domain IPR001810
SMART 41 81 41 SM00256 none A Receptor for Ubiquitination Targets IPR001810
SUPERFAMILY 129 357 229 SSF52047 none none none
PANTHER 1 478 478 PTHR32212:SF56 none none none
Pfam 535 582 48 PF03030 "KEGG:00190+3.6.1.1" Inorganic H+ pyrophosphatase IPR004131
Pfam 591 625 35 PF03030 "KEGG:00190+3.6.1.1" Inorganic H+ pyrophosphatase IPR004131
SUPERFAMILY 35 78 44 SSF81383 none none IPR001810
Phobius 529 553 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 35 71 37 PS50181 none F-box domain profile. IPR001810
SMART 382 454 73 SM00579 none domain in FBox and BRCT domain containing plant proteins IPR006566
Pfam 376 422 47 PF08387 none FBD IPR006566
PANTHER 1 478 478 PTHR32212 none none none
Phobius 1 528 528 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

1 Localization

Analysis Start End Length
TMHMM 533 555 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting