Protein : Qrob_P0390880.2 Q. robur
Protein Identifier  ? Qrob_P0390880.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR10809:SF42 - VESICLE-ASSOCIATED PROTEIN 2-1 (PTHR10809:SF42) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 228  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005789 endoplasmic reticulum membrane The lipid bilayer surrounding the endoplasmic reticulum.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103960319 4 227 + 224 Gaps:2 100.00 222 75.68 8e-123 vesicle-associated protein 2-1-like
blastp_kegg lcl|pxb:103935838 4 227 + 224 Gaps:2 100.00 222 75.68 2e-122 vesicle-associated protein 2-1-like
blastp_kegg lcl|mdm:103420181 4 227 + 224 Gaps:2 100.00 222 76.13 3e-122 vesicle-associated protein 2-1-like
blastp_kegg lcl|tcc:TCM_015877 6 224 + 219 Gaps:4 97.31 223 78.80 1e-121 Plant VAMP (vesicle-associated membrane protein) family protein
blastp_kegg lcl|pmum:103337021 4 227 + 224 Gaps:1 100.00 223 78.03 6e-120 vesicle-associated protein 2-1
blastp_kegg lcl|pper:PRUPE_ppa011107mg 4 227 + 224 Gaps:1 100.00 223 77.58 3e-119 hypothetical protein
blastp_kegg lcl|cmo:103490849 4 227 + 224 Gaps:8 100.00 216 76.39 3e-118 vesicle-associated protein 2-1
blastp_kegg lcl|cit:102630951 6 224 + 219 Gaps:3 95.58 226 77.31 3e-118 vesicle-associated protein 2-1-like
blastp_kegg lcl|fve:101314091 4 227 + 224 Gaps:5 92.80 236 72.60 6e-117 vesicle-associated protein 2-1-like
blastp_kegg lcl|csv:101231496 4 227 + 224 Gaps:4 100.00 220 74.55 6e-117 vesicle-associated protein 2-1-like
blastp_pdb 2rr3_A 4 104 + 101 Gaps:1 76.92 130 39.00 1e-15 mol:protein length:130 Vesicle-associated membrane protein-associate
blastp_pdb 2cri_A 12 103 + 92 Gaps:1 61.90 147 40.66 7e-15 mol:protein length:147 Vesicle-associated membrane protein-associate
blastp_pdb 1z9o_F 12 103 + 92 Gaps:1 71.09 128 41.76 8e-15 mol:protein length:128 Vesicle-associated membrane protein-associate
blastp_pdb 1z9o_E 12 103 + 92 Gaps:1 71.09 128 41.76 8e-15 mol:protein length:128 Vesicle-associated membrane protein-associate
blastp_pdb 1z9o_D 12 103 + 92 Gaps:1 71.09 128 41.76 8e-15 mol:protein length:128 Vesicle-associated membrane protein-associate
blastp_pdb 1z9o_C 12 103 + 92 Gaps:1 71.09 128 41.76 8e-15 mol:protein length:128 Vesicle-associated membrane protein-associate
blastp_pdb 1z9o_B 12 103 + 92 Gaps:1 71.09 128 41.76 8e-15 mol:protein length:128 Vesicle-associated membrane protein-associate
blastp_pdb 1z9o_A 12 103 + 92 Gaps:1 71.09 128 41.76 8e-15 mol:protein length:128 Vesicle-associated membrane protein-associate
blastp_pdb 1z9l_A 12 103 + 92 Gaps:1 71.09 128 41.76 8e-15 mol:protein length:128 Vesicle-associated membrane protein-associate
blastp_pdb 3ikk_B 11 109 + 99 Gaps:4 76.38 127 42.27 2e-14 mol:protein length:127 Vesicle-associated membrane protein-associate
blastp_uniprot_sprot sp|Q9LVU1|VAP21_ARATH 7 225 + 219 Gaps:5 99.09 220 68.81 2e-106 Vesicle-associated protein 2-1 OS Arabidopsis thaliana GN PVA21 PE 2 SV 1
blastp_uniprot_sprot sp|Q84WW5|VAP13_ARATH 12 218 + 207 Gaps:25 97.07 239 43.53 1e-50 Vesicle-associated protein 1-3 OS Arabidopsis thaliana GN PVA13 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SHC8|VAP12_ARATH 8 202 + 195 Gaps:26 92.47 239 39.82 1e-47 Vesicle-associated protein 1-2 OS Arabidopsis thaliana GN PVA12 PE 1 SV 1
blastp_uniprot_sprot sp|Q8VZ95|VAP11_ARATH 7 202 + 196 Gaps:27 87.11 256 38.57 5e-46 Vesicle-associated protein 1-1 OS Arabidopsis thaliana GN PVA11 PE 1 SV 1
blastp_uniprot_sprot sp|B9DHD7|VAP22_ARATH 12 195 + 184 Gaps:8 45.60 386 45.45 1e-35 Vesicle-associated protein 2-2 OS Arabidopsis thaliana GN PVA22 PE 1 SV 1
blastp_uniprot_sprot sp|O82213|VAP31_ARATH 9 142 + 134 none 89.93 149 44.78 2e-35 Vesicle-associated protein 3-1 OS Arabidopsis thaliana GN PVA31 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SYC9|VAP14_ARATH 4 162 + 159 Gaps:12 55.34 571 40.19 1e-33 Vesicle-associated protein 1-4 OS Arabidopsis thaliana GN PVA14 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R601|VAPA_PONAB 2 218 + 217 Gaps:38 97.59 249 27.98 2e-17 Vesicle-associated membrane protein-associated protein A OS Pongo abelii GN VAPA PE 2 SV 2
blastp_uniprot_sprot sp|Q9P0L0|VAPA_HUMAN 2 218 + 217 Gaps:38 97.59 249 27.98 2e-17 Vesicle-associated membrane protein-associated protein A OS Homo sapiens GN VAPA PE 1 SV 3
blastp_uniprot_sprot sp|Q9Z270|VAPA_RAT 2 218 + 217 Gaps:38 97.59 249 27.98 8e-17 Vesicle-associated membrane protein-associated protein A OS Rattus norvegicus GN Vapa PE 1 SV 3

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 155 197 43 Coil none none none
Phobius 218 227 10 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 9 143 135 SSF49354 none none IPR008962
PANTHER 7 219 213 PTHR10809:SF42 none none none
Phobius 1 196 196 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 197 217 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 13 115 103 PF00635 none MSP (Major sperm protein) domain IPR000535
ProSiteProfiles 12 132 121 PS50202 none Major sperm protein (MSP) domain profile. IPR000535
PANTHER 7 219 213 PTHR10809 "Reactome:REACT_22258";signature_desc=VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN none IPR016763
Gene3D 10 131 122 G3DSA:2.60.40.360 none none IPR008962

1 Localization

Analysis Start End Length
TMHMM 197 219 22

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting