Protein : Qrob_P0388000.2 Q. robur
Protein Identifier  ? Qrob_P0388000.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR11207:SF1 - RIBONUCLEASE III Gene Prediction Quality  validated
Protein length 

Sequence

Length: 305  
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003725 double-stranded RNA binding Interacting selectively and non-covalently with double-stranded RNA.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100257098 1 296 + 296 Gaps:45 93.39 333 62.70 3e-110 double-stranded RNA-binding protein 4-like
blastp_kegg lcl|cic:CICLE_v10011836mg 1 296 + 296 Gaps:67 83.01 418 53.31 5e-91 hypothetical protein
blastp_kegg lcl|cit:102607749 1 296 + 296 Gaps:61 82.62 420 53.03 3e-90 double-stranded RNA-binding protein 4-like
blastp_kegg lcl|pop:POPTR_0005s14370g 1 214 + 214 Gaps:5 44.47 470 66.99 9e-89 hypothetical protein
blastp_kegg lcl|tcc:TCM_019209 1 251 + 251 Gaps:28 83.92 311 55.56 8e-78 DsRNA-binding domain-like superfamily protein putative
blastp_kegg lcl|sly:101257125 1 296 + 296 Gaps:41 76.67 403 49.19 1e-77 uncharacterized LOC101257125
blastp_kegg lcl|sot:102594805 1 295 + 295 Gaps:43 86.20 355 48.69 1e-74 double-stranded RNA-binding protein 4-like
blastp_kegg lcl|pda:103722271 1 177 + 177 Gaps:1 48.24 369 64.04 2e-73 double-stranded RNA-binding protein 1-like
blastp_kegg lcl|rcu:RCOM_0285330 1 274 + 274 Gaps:21 95.85 289 51.26 8e-71 double-stranded RNA binding protein putative
blastp_kegg lcl|pda:103699073 1 177 + 177 Gaps:1 42.08 423 63.48 2e-70 uncharacterized LOC103699073
blastp_pdb 3adi_C 1 70 + 70 none 95.89 73 44.29 2e-14 mol:protein length:73 F21M12.9 protein
blastp_pdb 3adi_B 1 70 + 70 none 95.89 73 44.29 2e-14 mol:protein length:73 F21M12.9 protein
blastp_pdb 3adi_A 1 70 + 70 none 95.89 73 44.29 2e-14 mol:protein length:73 F21M12.9 protein
blastp_pdb 3adg_A 1 70 + 70 none 95.89 73 44.29 2e-14 mol:protein length:73 F21M12.9 protein
blastp_pdb 2l2n_A 1 70 + 70 none 67.96 103 44.29 2e-14 mol:protein length:103 Hyponastic leave 1
blastp_uniprot_sprot sp|Q6YW64|DRB4_ORYSJ 2 175 + 174 Gaps:11 56.73 312 42.37 2e-32 Double-stranded RNA-binding protein 4 OS Oryza sativa subsp. japonica GN DRB4 PE 2 SV 1
blastp_uniprot_sprot sp|Q0IQN6|DRB8_ORYSJ 1 165 + 165 Gaps:3 39.15 424 37.95 5e-25 Double-stranded RNA-binding protein 8 OS Oryza sativa subsp. japonica GN DRB8 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DJA3|DRB3_ORYSJ 1 165 + 165 Gaps:3 37.99 437 37.95 7e-25 Double-stranded RNA-binding protein 3 OS Oryza sativa subsp. japonica GN DRB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q0IV63|DRB7_ORYSJ 1 165 + 165 Gaps:3 35.10 473 37.95 8e-25 Double-stranded RNA-binding protein 7 OS Oryza sativa subsp. japonica GN DRB7 PE 2 SV 1
blastp_uniprot_sprot sp|O04492|DRB1_ARATH 1 151 + 151 Gaps:5 36.75 419 37.66 5e-24 Double-stranded RNA-binding protein 1 OS Arabidopsis thaliana GN DRB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q0DKP4|DRB2_ORYSJ 1 151 + 151 Gaps:2 25.80 593 35.95 2e-18 Double-stranded RNA-binding protein 2 OS Oryza sativa subsp. japonica GN DRB2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SKN2|DRB2_ARATH 1 151 + 151 Gaps:2 35.25 434 35.95 6e-18 Double-stranded RNA-binding protein 2 OS Arabidopsis thaliana GN DRB2 PE 1 SV 1
blastp_uniprot_sprot sp|B7E321|DRB5_ORYSJ 1 151 + 151 Gaps:6 37.87 404 36.60 4e-17 Double-stranded RNA-binding protein 5 OS Oryza sativa subsp. japonica GN DRB5 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GY79|DRB5_ARATH 1 151 + 151 Gaps:2 38.93 393 33.99 2e-16 Double-stranded RNA-binding protein 5 OS Arabidopsis thaliana GN DRB5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LJF5|DRB3_ARATH 1 151 + 151 Gaps:2 42.62 359 33.33 3e-16 Double-stranded RNA-binding protein 3 OS Arabidopsis thaliana GN DRB3 PE 2 SV 1
rpsblast_cdd gnl|CDD|178863 2 71 + 70 Gaps:12 30.57 229 38.57 8e-12 PRK00102 rnc ribonuclease III Reviewed.
rpsblast_cdd gnl|CDD|200945 2 68 + 67 Gaps:7 100.00 66 36.36 1e-07 pfam00035 dsrm Double-stranded RNA binding motif. Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans which is part of the cellular response to dsRNA.
rpsblast_cdd gnl|CDD|28930 2 68 + 67 Gaps:2 98.53 68 37.31 1e-07 cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR RNA helicases Drosophila staufen protein E. coli RNase III RNases H1 and dsRNA dependent adenosine deaminases..

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 2 69 68 SM00358 none Double-stranded RNA binding motif IPR014720
SMART 87 152 66 SM00358 none Double-stranded RNA binding motif IPR014720
Pfam 2 67 66 PF00035 none Double-stranded RNA binding motif IPR014720
Pfam 88 147 60 PF00035 none Double-stranded RNA binding motif IPR014720
Gene3D 88 151 64 G3DSA:3.30.160.20 none none IPR014720
Gene3D 2 68 67 G3DSA:3.30.160.20 none none IPR014720
PANTHER 1 155 155 PTHR11207:SF1 none none IPR031147
ProSiteProfiles 86 153 68 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
SUPERFAMILY 88 153 66 SSF54768 none none none
SUPERFAMILY 2 68 67 SSF54768 none none none
ProSiteProfiles 1 70 70 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
PANTHER 1 155 155 PTHR11207 none none none

0 Localization

0 Qtllist

0 Targeting