Protein : Qrob_P0383720.2 Q. robur
Protein Identifier  ? Qrob_P0383720.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=4) PTHR18934:SF103 - ATP-DEPENDENT RNA HELICASE A-LIKE PROTEIN (PTHR18934:SF103) Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 171  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0004386 helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_123s0012 21 165 + 145 none 27.26 532 87.59 5e-86 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0943710 16 165 + 150 none 13.29 1129 84.67 1e-82 ATP-dependent RNA helicase putative
blastp_kegg lcl|pop:POPTR_0010s25230g 23 165 + 143 none 12.34 1159 86.01 4e-80 POPTRDRAFT_884297 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_011G1853000 30 165 + 136 none 20.36 668 86.76 2e-77 hypothetical protein
blastp_kegg lcl|gmx:100792410 30 165 + 136 none 11.71 1161 86.76 8e-77 probable ATP-dependent RNA helicase DHX36-like
blastp_kegg lcl|vvi:100251493 30 165 + 136 none 11.97 1136 86.76 2e-76 probable ATP-dependent RNA helicase DHX36-like
blastp_kegg lcl|pop:POPTR_0008s01470g 30 165 + 136 none 11.79 1154 86.76 3e-76 POPTRDRAFT_420510 hypothetical protein
blastp_kegg lcl|cmo:103489349 30 165 + 136 none 11.90 1143 86.76 3e-76 ATP-dependent RNA helicase DHX36
blastp_kegg lcl|cit:102607120 30 165 + 136 none 11.86 1147 86.76 4e-76 probable ATP-dependent RNA helicase DHX36-like
blastp_kegg lcl|cic:CICLE_v10024744mg 30 165 + 136 none 11.87 1146 86.76 5e-76 hypothetical protein
blastp_pdb 3kx2_A 23 170 + 148 Gaps:10 19.30 767 40.54 3e-23 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 3kx2_B 23 170 + 148 Gaps:10 19.30 767 40.54 3e-23 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 2xau_B 23 170 + 148 Gaps:10 19.15 773 40.54 3e-23 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 2xau_A 23 170 + 148 Gaps:10 19.15 773 40.54 3e-23 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 3i4u_A 93 167 + 75 none 27.78 270 40.00 3e-10 mol:protein length:270 ATP-dependent RNA helicase DHX8
blastp_uniprot_sprot sp|Q8VHK9|DHX36_MOUSE 23 165 + 143 none 14.29 1001 49.65 2e-40 Probable ATP-dependent RNA helicase DHX36 OS Mus musculus GN Dhx36 PE 1 SV 2
blastp_uniprot_sprot sp|Q9H2U1|DHX36_HUMAN 23 165 + 143 none 14.19 1008 49.65 4e-40 Probable ATP-dependent RNA helicase DHX36 OS Homo sapiens GN DHX36 PE 1 SV 2
blastp_uniprot_sprot sp|B2RR83|YTDC2_MOUSE 20 158 + 139 Gaps:2 9.76 1445 48.23 6e-35 Probable ATP-dependent RNA helicase YTHDC2 OS Mus musculus GN Ythdc2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9H6S0|YTDC2_HUMAN 20 158 + 139 Gaps:2 9.86 1430 48.23 7e-35 Probable ATP-dependent RNA helicase YTHDC2 OS Homo sapiens GN YTHDC2 PE 1 SV 2
blastp_uniprot_sprot sp|Q6PGC1|DHX29_MOUSE 7 163 + 157 Gaps:1 11.58 1365 42.41 2e-34 ATP-dependent RNA helicase Dhx29 OS Mus musculus GN Dhx29 PE 2 SV 1
blastp_uniprot_sprot sp|Q7Z478|DHX29_HUMAN 7 163 + 157 Gaps:1 11.54 1369 42.41 2e-34 ATP-dependent RNA helicase DHX29 OS Homo sapiens GN DHX29 PE 1 SV 2
blastp_uniprot_sprot sp|A3KMI0|DHX29_XENLA 7 163 + 157 Gaps:1 11.60 1362 42.41 4e-34 ATP-dependent RNA helicase DHX29 OS Xenopus laevis GN dhx29 PE 2 SV 1
blastp_uniprot_sprot sp|Q14147|DHX34_HUMAN 16 155 + 140 Gaps:2 12.07 1143 45.65 9e-32 Probable ATP-dependent RNA helicase DHX34 OS Homo sapiens GN DHX34 PE 1 SV 2
blastp_uniprot_sprot sp|Q9DBV3|DHX34_MOUSE 16 155 + 140 Gaps:2 12.05 1145 44.93 3e-31 Probable ATP-dependent RNA helicase DHX34 OS Mus musculus GN Dhx34 PE 2 SV 2
blastp_uniprot_sprot sp|Q6P5D3|DHX57_MOUSE 16 163 + 148 Gaps:4 10.95 1388 41.45 3e-31 Putative ATP-dependent RNA helicase DHX57 OS Mus musculus GN Dhx57 PE 2 SV 2
rpsblast_cdd gnl|CDD|31829 23 162 + 140 Gaps:6 16.80 845 42.25 5e-30 COG1643 HrpA HrpA-like helicases [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|162629 23 162 + 140 Gaps:5 10.99 1283 39.01 5e-27 TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long while its paralog HrpB also uncharacterized is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
rpsblast_cdd gnl|CDD|182986 23 165 + 143 Gaps:7 11.28 1294 36.30 3e-22 PRK11131 PRK11131 ATP-dependent RNA helicase HrpA Provisional.
rpsblast_cdd gnl|CDD|190974 93 163 + 71 none 78.02 91 45.07 2e-20 pfam04408 HA2 Helicase associated domain (HA2). This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown however it seems likely to be involved in nucleic acid binding.
rpsblast_cdd gnl|CDD|197915 100 163 + 64 Gaps:2 75.61 82 48.39 1e-15 smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown however it seems likely to be involved in nucleic acid binding.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 93 168 76 SM00847 none Helicase associated domain (HA2) Add an annotation IPR007502
PANTHER 23 164 142 PTHR18934 none none none
Coils 4 25 22 Coil none none none
PANTHER 23 164 142 PTHR18934:SF103 none none none
Pfam 93 164 72 PF04408 none Helicase associated domain (HA2) IPR007502
SUPERFAMILY 23 163 141 SSF52540 none none IPR027417

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting