3 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0005488 | binding | The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. |
| GO:0006886 | intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
| GO:0008536 | Ran GTPase binding | Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly. |
20 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pvu:PHAVU_007G2436000 | 1 | 135 | + | 135 | none | 38.03 | 355 | 83.70 | 5e-79 | hypothetical protein |
| blastp_kegg | lcl|pmum:103344325 | 1 | 134 | + | 134 | none | 100.00 | 134 | 83.58 | 3e-78 | exportin-7-like |
| blastp_kegg | lcl|vvi:100254054 | 1 | 138 | + | 138 | none | 13.12 | 1052 | 89.13 | 6e-78 | exportin-7-like |
| blastp_kegg | lcl|rcu:RCOM_0622010 | 1 | 138 | + | 138 | none | 12.67 | 1089 | 84.78 | 3e-74 | Exportin-7 putative |
| blastp_kegg | lcl|gmx:100791060 | 1 | 134 | + | 134 | none | 12.80 | 1047 | 84.33 | 5e-74 | exportin-7-A-like |
| blastp_kegg | lcl|cam:101505659 | 1 | 135 | + | 135 | none | 12.84 | 1051 | 84.44 | 3e-73 | exportin-7-like |
| blastp_kegg | lcl|cit:102620131 | 1 | 138 | + | 138 | none | 13.12 | 1052 | 84.06 | 1e-72 | exportin-7-like |
| blastp_kegg | lcl|pper:PRUPE_ppa000653mg | 1 | 138 | + | 138 | none | 13.13 | 1051 | 82.61 | 2e-72 | hypothetical protein |
| blastp_kegg | lcl|fve:101299613 | 1 | 138 | + | 138 | none | 13.12 | 1052 | 81.88 | 4e-72 | exportin-7-like |
| blastp_kegg | lcl|mus:103986231 | 1 | 144 | + | 144 | Gaps:1 | 13.53 | 1057 | 81.82 | 4e-72 | exportin-7-like isoform X1 |
| blastp_uniprot_sprot | sp|Q5ZLT0|XPO7_CHICK | 1 | 132 | + | 132 | Gaps:7 | 12.60 | 1087 | 45.99 | 1e-28 | Exportin-7 OS Gallus gallus GN XPO7 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9EPK7|XPO7_MOUSE | 1 | 132 | + | 132 | Gaps:7 | 12.60 | 1087 | 45.99 | 3e-28 | Exportin-7 OS Mus musculus GN Xpo7 PE 2 SV 3 |
| blastp_uniprot_sprot | sp|Q9UIA9|XPO7_HUMAN | 1 | 132 | + | 132 | Gaps:7 | 12.60 | 1087 | 45.99 | 3e-28 | Exportin-7 OS Homo sapiens GN XPO7 PE 1 SV 3 |
| blastp_uniprot_sprot | sp|Q5R9G4|XPO7_PONAB | 1 | 132 | + | 132 | Gaps:7 | 12.60 | 1087 | 45.99 | 3e-28 | Exportin-7 OS Pongo abelii GN XPO7 PE 2 SV 3 |
| blastp_uniprot_sprot | sp|Q704U0|XPO7A_XENLA | 1 | 132 | + | 132 | Gaps:7 | 12.60 | 1087 | 43.07 | 2e-26 | Exportin-7-A OS Xenopus laevis GN xpo7-a PE 1 SV 1 |
| blastp_uniprot_sprot | sp|Q569Z2|XPO7B_XENLA | 1 | 132 | + | 132 | Gaps:7 | 12.60 | 1087 | 43.07 | 5e-26 | Exportin-7-B OS Xenopus laevis GN xpo7-b PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q99NF8|RBP17_MOUSE | 2 | 132 | + | 131 | Gaps:6 | 12.41 | 1088 | 42.22 | 1e-24 | Ran-binding protein 17 OS Mus musculus GN Ranbp17 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9H2T7|RBP17_HUMAN | 2 | 132 | + | 131 | Gaps:6 | 12.41 | 1088 | 40.74 | 3e-24 | Ran-binding protein 17 OS Homo sapiens GN RANBP17 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9GQN0|RBP16_DROME | 4 | 132 | + | 129 | Gaps:7 | 11.84 | 1098 | 41.54 | 7e-22 | Ran-binding protein 16 OS Drosophila melanogaster GN Ranbp16 PE 2 SV 1 |
| rpsblast_kog | gnl|CDD|36624 | 1 | 137 | + | 137 | Gaps:5 | 13.12 | 1082 | 45.77 | 2e-46 | KOG1410 KOG1410 KOG1410 Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure Intracellular trafficking secretion and vesicular transport]. |
7 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| PANTHER | 1 | 137 | 137 | PTHR12596 | none | none | none |
| PANTHER | 1 | 137 | 137 | PTHR12596:SF2 | none | none | none |
| SMART | 26 | 90 | 65 | SM00913 | none | Importin-beta N-terminal domain | IPR001494 |
| Pfam | 26 | 89 | 64 | PF03810 | none | Importin-beta N-terminal domain | IPR001494 |
| Coils | 4 | 25 | 22 | Coil | none | none | none |
| SUPERFAMILY | 1 | 143 | 143 | SSF48371 | none | none | IPR016024 |
| Gene3D | 6 | 140 | 135 | G3DSA:1.25.10.10 | none | none | IPR011989 |
13 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2014_nLBD*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 34,91 | 16,12 | 53,62 | lod | 2,4961 | 5,2 |
| Bourran2_2014_nPriLBD_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,36 | 0 | 30,43 | lod | 2,5806 | 5,1 |
| Bourran2_2014_nEpis*_A4 | Qrob_Chr07 | 7 | v_12400_446 | s_1BPEBU_1211 | 6,93 | 0 | 15,13 | lod | 4,7411 | 11 |
| Bourran2_2014_nSecLBD_A4 | Qrob_Chr07 | 7 | v_8327_222 | s_1A4WGY_363 | 16,04 | 0 | 44,69 | lod | 2,6373 | 6,5 |
| Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
| Bourran2_2014_nP_3P | Qrob_Chr11 | 11 | v_11486_194 | s_1AT3E_2335 | 7,9 | 0,09 | 30,09 | lod | 2,3636 | 5 |
| Bourran2_2015_nEpis_A4 | Qrob_Chr09 | 9 | v_15847_485 | v_8329_369 | 34,94 | 34,88 | 37,45 | lod | 3.1 | 7 |
| Bourran2_2015_nEpiBC_A4 | Qrob_Chr07 | 7 | s_1DP9TW_798 | v_8128_173 | 22,61 | 22,14 | 22,73 | lod | 3.1 | 8.5 |
| Bourran2_2014_nEpiBC_A4 | Qrob_Chr07 | 7 | s_2FI9D9_500 | s_1AXDMJ_325 | 12,26 | 0 | 34,9 | lod | 2,2306 | 6,1 |
| Bourran2_2014_nPriBD_3P | Qrob_Chr11 | 11 | v_11486_194 | s_1AT3E_2335 | 5,54 | 0,4 | 20,6 | lod | 2,6345 | 5,9 |
| Bourran2_2002_QTL10_peak_Bud_burst_3P | Qrob_Chr07 | 7 | s_1CAWP_311 | s_1BEZ9M_461 | 7,5 | 0 | 21,5 | lod | 3,7 | 6,3 |
| Bourran2_2014_nPriBD*_A4 | Qrob_Chr07 | 7 | s_1A7UI0_596 | s_1A3H6S_352 | 8,02 | 0 | 20,53 | lod | 4,1062 | 10,8 |
| Bourran2_2014_nPriLBD*_A4 | Qrob_Chr07 | 7 | s_1C6BY7_802 | s_1BPEBU_1211 | 7,15 | 0 | 16,34 | lod | 3,9419 | 10,2 |
