Protein : Qrob_P0380060.2 Q. robur
Protein Identifier  ? Qrob_P0380060.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) KOG2267 - Eukaryotic-type DNA primase large subunit [Replication recombination and repair]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 203  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003896 DNA primase activity Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase.
GO:0006269 DNA replication, synthesis of RNA primer The synthesis of a short RNA polymer, usually 4-15 nucleotides long, using one strand of unwound DNA as a template; the RNA then serves as a primer from which DNA polymerases extend synthesis.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_034485 2 86 + 85 none 6.81 1249 89.41 1e-44 Uncharacterized protein isoform 1
blastp_kegg lcl|fve:101306532 2 108 + 107 Gaps:1 8.71 1240 70.37 2e-44 uncharacterized protein LOC101306532
blastp_kegg lcl|cit:102628412 2 86 + 85 none 6.90 1231 84.71 3e-43 uncharacterized LOC102628412
blastp_kegg lcl|cic:CICLE_v10000059mg 2 86 + 85 none 6.90 1231 84.71 3e-43 hypothetical protein
blastp_kegg lcl|mdm:103410905 2 86 + 85 none 6.88 1236 88.24 9e-43 uncharacterized LOC103410905
blastp_kegg lcl|mdm:103421303 2 86 + 85 none 6.88 1236 88.24 1e-42 uncharacterized LOC103421303
blastp_kegg lcl|rcu:RCOM_1039120 2 108 + 107 Gaps:1 8.86 1219 67.59 2e-42 hypothetical protein
blastp_kegg lcl|cam:101498131 2 86 + 85 none 6.89 1233 82.35 4e-42 uncharacterized LOC101498131
blastp_kegg lcl|pmum:103319614 2 86 + 85 none 6.89 1234 84.71 8e-42 uncharacterized LOC103319614
blastp_kegg lcl|pper:PRUPE_ppa000370mg 2 86 + 85 none 6.88 1235 84.71 9e-42 hypothetical protein
blastp_uniprot_sprot sp|Q84WJ2|PRI2_ARATH 90 198 + 109 Gaps:6 26.87 454 62.30 9e-26 Probable DNA primase large subunit OS Arabidopsis thaliana GN At1g67320 PE 2 SV 2
blastp_uniprot_sprot sp|O89044|PRI2_RAT 99 171 + 73 none 14.40 507 36.99 9e-08 DNA primase large subunit OS Rattus norvegicus GN Prim2 PE 2 SV 1
blastp_uniprot_sprot sp|P33610|PRI2_MOUSE 99 171 + 73 none 14.46 505 36.99 9e-08 DNA primase large subunit OS Mus musculus GN Prim2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9VPH2|PRI2_DROME 93 138 + 46 none 8.63 533 45.65 6e-07 DNA primase large subunit OS Drosophila melanogaster GN DNApol-alpha60 PE 1 SV 2
blastp_uniprot_sprot sp|P49643|PRI2_HUMAN 99 171 + 73 none 14.34 509 35.62 1e-06 DNA primase large subunit OS Homo sapiens GN PRIM2 PE 1 SV 2
rpsblast_cdd gnl|CDD|143474 106 184 + 79 Gaps:1 20.51 390 43.75 2e-16 cd07322 PriL_PriS_Eukaryotic Eukaryotic core primase: Large subunit PriL. Primases synthesize the RNA primers required for DNA replication. Primases are grouped into two classes bacteria/bacteriophage and archaeal/eukaryotic. The proteins in the two classes differ in structure and the replication apparatus components. Archaeal/eukaryotic core primase is a heterodimeric enzyme consisting of a small catalytic subunit (PriS) and a large subunit (PriL). In eukaryotic organisms a heterotetrameric enzyme formed by DNA polymerase alpha the B subunit and two primase subunits has primase activity. Although the catalytic activity resides within PriS the PriL subunit is essential for primase function as disruption of the PriL gene in yeast is lethal. PriL is composed of two structural domains. Several functions have been proposed for PriL such as stabilization of the PriS involvement in synthesis initiation improvement of primase processivity determination of product size and transfer of the products to DNA polymerase alpha.
rpsblast_kog gnl|CDD|37478 94 166 + 73 none 15.37 475 28.77 7e-11 KOG2267 KOG2267 KOG2267 Eukaryotic-type DNA primase large subunit [Replication recombination and repair].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 86 85 PTHR31110:SF2 none none none
PANTHER 2 86 85 PTHR31110 none none none
Pfam 162 197 36 PF04104 none Eukaryotic and archaeal DNA primase, large subunit IPR007238

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting