Protein : Qrob_P0377160.2 Q. robur
Protein Identifier  ? Qrob_P0377160.2 Organism . Name  Quercus robur
Score  92.1 Score Type  egn
Protein Description  (M=1) PTHR31339:SF3 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN (PTHR31339:SF3) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 452  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103337656 25 450 + 426 Gaps:2 95.93 442 81.60 0.0 probable polygalacturonase
blastp_kegg lcl|pper:PRUPE_ppa005818mg 25 450 + 426 Gaps:2 95.93 442 81.37 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10020162mg 1 451 + 451 Gaps:8 100.00 443 82.17 0.0 hypothetical protein
blastp_kegg lcl|gmx:100785590 31 448 + 418 Gaps:3 93.89 442 83.37 0.0 probable polygalacturonase-like
blastp_kegg lcl|tcc:TCM_016449 1 451 + 451 Gaps:7 100.00 448 79.24 0.0 Pectin lyase-like superfamily protein
blastp_kegg lcl|cit:102613856 1 451 + 451 Gaps:8 100.00 443 81.49 0.0 probable polygalacturonase-like
blastp_kegg lcl|cam:101493527 31 450 + 420 Gaps:3 92.87 449 82.49 0.0 probable polygalacturonase-like
blastp_kegg lcl|gmx:100816170 31 448 + 418 Gaps:7 93.68 443 82.89 0.0 probable polygalacturonase-like
blastp_kegg lcl|sot:102591521 6 451 + 446 Gaps:8 98.43 447 78.18 0.0 probable polygalacturonase-like
blastp_kegg lcl|fve:101311859 16 450 + 435 Gaps:8 99.55 443 79.59 0.0 probable polygalacturonase-like
blastp_pdb 3jur_D 44 407 + 364 Gaps:62 86.16 448 33.68 3e-43 mol:protein length:448 Exo-poly-alpha-D-galacturonosidase
blastp_pdb 3jur_C 44 407 + 364 Gaps:62 86.16 448 33.68 3e-43 mol:protein length:448 Exo-poly-alpha-D-galacturonosidase
blastp_pdb 3jur_B 44 407 + 364 Gaps:62 86.16 448 33.68 3e-43 mol:protein length:448 Exo-poly-alpha-D-galacturonosidase
blastp_pdb 3jur_A 44 407 + 364 Gaps:62 86.16 448 33.68 3e-43 mol:protein length:448 Exo-poly-alpha-D-galacturonosidase
blastp_pdb 1bhe_A 88 348 + 261 Gaps:27 69.15 376 33.85 1e-19 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 2uvf_B 45 378 + 334 Gaps:74 62.17 608 25.93 1e-17 mol:protein length:608 EXOPOLYGALACTURONASE
blastp_pdb 2uvf_A 45 378 + 334 Gaps:74 62.17 608 25.93 1e-17 mol:protein length:608 EXOPOLYGALACTURONASE
blastp_pdb 2uve_B 45 378 + 334 Gaps:74 62.17 608 25.93 1e-17 mol:protein length:608 EXOPOLYGALACTURONASE
blastp_pdb 2uve_A 45 378 + 334 Gaps:74 62.17 608 25.93 1e-17 mol:protein length:608 EXOPOLYGALACTURONASE
blastp_pdb 1nhc_F 146 379 + 234 Gaps:25 67.56 336 27.75 1e-07 mol:protein length:336 Polygalacturonase I
blastp_uniprot_sprot sp|A7PZL3|PGLR_VITVI 41 451 + 411 Gaps:3 83.50 491 50.00 3e-140 Probable polygalacturonase OS Vitis vinifera GN GSVIVT00026920001 PE 1 SV 1
blastp_uniprot_sprot sp|Q8RY29|ADPG2_ARATH 45 407 + 363 Gaps:44 79.21 433 32.36 4e-29 Polygalacturonase ADPG2 OS Arabidopsis thaliana GN ADPG2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LW07|PGLR3_ARATH 42 446 + 405 Gaps:54 83.11 456 32.72 2e-28 Probable polygalacturonase At3g15720 OS Arabidopsis thaliana GN At3g15720 PE 1 SV 1
blastp_uniprot_sprot sp|Q02096|PGLR_PERAE 37 423 + 387 Gaps:47 78.35 462 29.28 1e-24 Polygalacturonase OS Persea americana PE 2 SV 1
blastp_uniprot_sprot sp|P27644|PGLR_RHIRD 184 394 + 211 Gaps:28 72.12 312 33.33 1e-23 Polygalacturonase OS Rhizobium radiobacter GN pgl PE 2 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 45 409 + 365 Gaps:54 80.05 431 27.83 2e-23 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|P43212|PGLR2_CRYJA 41 450 + 410 Gaps:59 76.07 514 31.46 7e-23 Polygalacturonase OS Cryptomeria japonica PE 1 SV 1
blastp_uniprot_sprot sp|Q7M1E7|PGLR2_CHAOB 35 422 + 388 Gaps:53 71.01 514 30.96 2e-22 Polygalacturonase OS Chamaecyparis obtusa PE 1 SV 1
blastp_uniprot_sprot sp|P35338|PGLR2_MAIZE 47 406 + 360 Gaps:59 82.68 410 31.27 2e-21 Exopolygalacturonase OS Zea mays GN PG9 PE 2 SV 1
blastp_uniprot_sprot sp|P26216|PGLR1_MAIZE 47 406 + 360 Gaps:59 82.68 410 30.97 3e-21 Exopolygalacturonase OS Zea mays GN PG1 PE 1 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 26 26 SIGNAL_PEPTIDE none Signal peptide region none
Gene3D 39 425 387 G3DSA:2.160.20.10 none none IPR012334
Phobius 4 15 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 36 439 404 SSF51126 none none IPR011050
SMART 239 271 33 SM00710 none Parallel beta-helix repeats IPR006626
SMART 212 238 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 273 294 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 329 350 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 300 321 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 363 402 40 SM00710 none Parallel beta-helix repeats IPR006626
Phobius 27 451 425 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 152 424 273 PF00295 none Glycosyl hydrolases family 28 IPR000743
PANTHER 41 447 407 PTHR31339:SF3 none none none
PANTHER 41 447 407 PTHR31339 none none none
Phobius 16 26 11 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none

3 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 19 18
SignalP_EUK 1 16 15
SignalP_GRAM_POSITIVE 1 25 24

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting