Protein : Qrob_P0374850.2 Q. robur
Protein Identifier  ? Qrob_P0374850.2 Organism . Name  Quercus robur
Score  25.6 Score Type  egn
Protein Description  (M=2) K14293 - importin subunit beta-1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 873  
Kegg Orthology  K14293
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0008536 Ran GTPase binding Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100818831 1 872 + 872 Gaps:2 100.00 870 91.38 0.0 importin subunit beta-1-like
blastp_kegg lcl|gmx:100805445 1 872 + 872 Gaps:2 100.00 870 91.03 0.0 importin subunit beta-1-like
blastp_kegg lcl|pvu:PHAVU_002G301300g 1 872 + 872 Gaps:2 100.00 870 90.92 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10018814mg 1 872 + 872 none 100.00 872 91.17 0.0 hypothetical protein
blastp_kegg lcl|cit:102621963 1 872 + 872 none 100.00 872 91.17 0.0 importin subunit beta-1-like
blastp_kegg lcl|vvi:100265913 1 871 + 871 Gaps:1 99.89 871 89.08 0.0 importin subunit beta-1-like
blastp_kegg lcl|rcu:RCOM_0736490 1 871 + 871 Gaps:1 99.89 871 88.85 0.0 importin beta-1 putative
blastp_kegg lcl|pop:POPTR_0015s01270g 1 871 + 871 Gaps:1 99.89 871 88.51 0.0 POPTRDRAFT_732844 hypothetical protein
blastp_kegg lcl|cam:101514483 1 872 + 872 Gaps:2 100.00 870 88.97 0.0 importin subunit beta-1-like
blastp_kegg lcl|pop:POPTR_0012s02460g 1 871 + 871 Gaps:1 99.89 871 88.05 0.0 POPTRDRAFT_569577 importin beta-2 family protein
blastp_pdb 1ukl_B 3 862 + 860 Gaps:41 98.74 876 40.81 0.0 mol:protein length:876 Importin beta-1 subunit
blastp_pdb 1ukl_A 3 862 + 860 Gaps:41 98.74 876 40.81 0.0 mol:protein length:876 Importin beta-1 subunit
blastp_pdb 3lww_C 3 862 + 860 Gaps:41 98.74 876 40.58 0.0 mol:protein length:876 Importin subunit beta-1
blastp_pdb 3lww_A 3 862 + 860 Gaps:41 98.74 876 40.58 0.0 mol:protein length:876 Importin subunit beta-1
blastp_pdb 2q5d_B 3 862 + 860 Gaps:41 98.74 876 40.58 0.0 mol:protein length:876 Importin beta-1 subunit
blastp_pdb 2q5d_A 3 862 + 860 Gaps:41 98.74 876 40.58 0.0 mol:protein length:876 Importin beta-1 subunit
blastp_pdb 2p8q_A 3 862 + 860 Gaps:41 98.74 876 40.58 0.0 mol:protein length:876 Importin beta-1 subunit
blastp_pdb 1qgr_A 3 862 + 860 Gaps:41 98.74 876 40.58 0.0 mol:protein length:876 PROTEIN (IMPORTIN BETA SUBUNIT)
blastp_pdb 1qgk_A 3 862 + 860 Gaps:41 98.74 876 40.58 0.0 mol:protein length:876 PROTEIN (IMPORTIN BETA SUBUNIT)
blastp_pdb 2qna_A 130 862 + 733 Gaps:40 96.98 762 41.68 2e-174 mol:protein length:762 Importin subunit beta-1
blastp_uniprot_sprot sp|P70168|IMB1_MOUSE 3 862 + 860 Gaps:41 98.74 876 40.81 0.0 Importin subunit beta-1 OS Mus musculus GN Kpnb1 PE 1 SV 2
blastp_uniprot_sprot sp|Q14974|IMB1_HUMAN 3 862 + 860 Gaps:41 98.74 876 40.58 0.0 Importin subunit beta-1 OS Homo sapiens GN KPNB1 PE 1 SV 2
blastp_uniprot_sprot sp|P52296|IMB1_RAT 3 862 + 860 Gaps:42 98.74 875 40.39 0.0 Importin subunit beta-1 OS Rattus norvegicus GN Kpnb1 PE 1 SV 1
blastp_uniprot_sprot sp|O13864|IMB1_SCHPO 16 868 + 853 Gaps:37 98.03 863 40.31 0.0 Importin subunit beta-1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN kap95 PE 3 SV 1
blastp_uniprot_sprot sp|O18388|IMB_DROME 1 868 + 868 Gaps:44 98.64 884 38.30 1e-179 Importin subunit beta OS Drosophila melanogaster GN Fs(2)Ket PE 2 SV 2
blastp_uniprot_sprot sp|Q06142|IMB1_YEAST 4 823 + 820 Gaps:34 93.61 861 34.49 9e-125 Importin subunit beta-1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN KAP95 PE 1 SV 1
blastp_uniprot_sprot sp|Q8H0U4|TNPO1_ARATH 49 593 + 545 Gaps:104 60.27 891 24.95 4e-25 Transportin-1 OS Arabidopsis thaliana GN TRN1 PE 1 SV 1
blastp_uniprot_sprot sp|B9FDR3|TNPO1_ORYSJ 9 635 + 627 Gaps:136 68.57 891 24.55 8e-21 Transportin-1 OS Oryza sativa subsp. japonica GN TRN1 PE 3 SV 2
blastp_uniprot_sprot sp|B8ARW2|TNPO1_ORYSI 9 635 + 627 Gaps:136 68.65 890 24.55 1e-20 Transportin-1 OS Oryza sativa subsp. indica GN OsI_18044 PE 2 SV 1
blastp_uniprot_sprot sp|Q8BFY9|TNPO1_MOUSE 12 510 + 499 Gaps:121 56.35 898 23.32 1e-15 Transportin-1 OS Mus musculus GN Tnpo1 PE 1 SV 2

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 870 870 PTHR10527:SF19 none none none
SMART 23 103 81 SM00913 none Importin-beta N-terminal domain IPR001494
Gene3D 129 862 734 G3DSA:1.25.10.10 none none IPR011989
ProSiteProfiles 23 103 81 PS50166 none Importin-beta N-terminal domain profile. IPR001494
PANTHER 1 870 870 PTHR10527 none none none
Pfam 23 102 80 PF03810 none Importin-beta N-terminal domain IPR001494
SUPERFAMILY 3 862 860 SSF48371 none none IPR016024
Pfam 381 437 57 PF13513 none HEAT-like repeat none

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting