Protein : Qrob_P0374780.2 Q. robur
Protein Identifier  ? Qrob_P0374780.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K03031 - 26S proteasome regulatory subunit N12 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 217  
Kegg Orthology  K03031
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0005838 proteasome regulatory particle A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes and unfolds ubiquitinated proteins, and translocates them to the proteasome core complex.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100785835 12 216 + 205 none 76.78 267 91.22 3e-127 26S proteasome non-ATPase regulatory subunit RPN12A-like
blastp_kegg lcl|tcc:TCM_025368 12 216 + 205 none 76.78 267 89.76 4e-126 Regulatory particle non-ATPase 12A isoform 1
blastp_kegg lcl|pvu:PHAVU_002G197600g 12 216 + 205 none 76.78 267 90.73 4e-126 hypothetical protein
blastp_kegg lcl|gmx:100803720 12 216 + 205 none 76.78 267 90.73 8e-126 26S proteasome non-ATPase regulatory subunit 8 homolog A-like
blastp_kegg lcl|mtr:MTR_1g016750 12 216 + 205 none 76.78 267 89.27 8e-125 26S proteasome non-ATPase regulatory subunit
blastp_kegg lcl|vvi:100258086 5 216 + 212 none 79.40 267 86.79 9e-125 26S proteasome non-ATPase regulatory subunit RPN12A-like
blastp_kegg lcl|cam:101489653 12 216 + 205 none 76.78 267 88.78 2e-124 26S proteasome non-ATPase regulatory subunit RPN12A-like
blastp_kegg lcl|cmo:103493070 12 216 + 205 none 76.78 267 88.78 2e-124 26S proteasome non-ATPase regulatory subunit 8 homolog A
blastp_kegg lcl|cam:101512310 12 216 + 205 none 76.78 267 88.78 3e-124 26S proteasome non-ATPase regulatory subunit RPN12A-like
blastp_kegg lcl|csv:101225090 12 216 + 205 none 76.78 267 87.32 1e-120 26S proteasome non-ATPase regulatory subunit RPN12A-like
blastp_uniprot_sprot sp|Q9SGW3|PSD8A_ARATH 12 216 + 205 none 76.78 267 84.39 3e-118 26S proteasome non-ATPase regulatory subunit 8 homolog A OS Arabidopsis thaliana GN RPN12A PE 1 SV 1
blastp_uniprot_sprot sp|Q9FHY0|PSD8B_ARATH 40 216 + 177 none 75.97 233 77.40 1e-98 Putative 26S proteasome non-ATPase regulatory subunit 8 homolog B OS Arabidopsis thaliana GN RPN12B PE 5 SV 2
blastp_uniprot_sprot sp|P02889|PSMD8_DICDI 12 216 + 205 Gaps:4 76.43 263 43.78 2e-53 Probable 26S proteasome non-ATPase regulatory subunit 8 OS Dictyostelium discoideum GN psmD8-1 PE 3 SV 2
blastp_uniprot_sprot sp|Q3SYT7|PSMD8_BOVIN 12 216 + 205 Gaps:8 71.43 287 44.88 6e-41 26S proteasome non-ATPase regulatory subunit 8 OS Bos taurus GN PSMD8 PE 2 SV 3
blastp_uniprot_sprot sp|Q9CX56|PSMD8_MOUSE 12 216 + 205 Gaps:8 58.07 353 45.37 4e-40 26S proteasome non-ATPase regulatory subunit 8 OS Mus musculus GN Psmd8 PE 1 SV 2
blastp_uniprot_sprot sp|Q5RE15|PSMD8_PONAB 12 216 + 205 Gaps:4 70.93 289 43.90 6e-40 26S proteasome non-ATPase regulatory subunit 8 (Fragment) OS Pongo abelii GN PSMD8 PE 2 SV 2
blastp_uniprot_sprot sp|P48556|PSMD8_HUMAN 12 216 + 205 Gaps:4 58.57 350 43.90 3e-39 26S proteasome non-ATPase regulatory subunit 8 OS Homo sapiens GN PSMD8 PE 1 SV 2
blastp_uniprot_sprot sp|P50524|RPN12_SCHPO 12 216 + 205 Gaps:24 81.11 270 34.25 6e-32 26S proteasome regulatory subunit rpn12 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpn12 PE 1 SV 1
blastp_uniprot_sprot sp|Q23449|PSMD8_CAEEL 12 216 + 205 Gaps:8 80.40 250 33.33 2e-27 26S proteasome non-ATPase regulatory subunit 8 OS Caenorhabditis elegans GN rpn-12 PE 1 SV 1
blastp_uniprot_sprot sp|P32496|RPN12_YEAST 13 216 + 204 Gaps:14 78.10 274 30.84 2e-17 26S proteasome regulatory subunit RPN12 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPN12 PE 1 SV 3
rpsblast_cdd gnl|CDD|202616 12 156 + 145 Gaps:4 90.97 155 33.33 2e-26 pfam03399 SAC3_GANP SAC3/GANP/Nin1/mts3/eIF-3 p25 family. This large family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 and mammalian GANP/MCM3-associated proteins which facilitate the nuclear localisation of MCM3 a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits stabilisation of ternary complex binding to 40 S subunits and dissociation of 40 and 60 S subunits.
rpsblast_cdd gnl|CDD|204392 52 192 + 141 Gaps:5 98.61 144 33.10 4e-23 pfam10075 PCI_Csn8 COP9 signalosome subunit CSN8. This PCI_Csn8 domain is conserved from plants to humans. It is a signature protein motif found in components of CSN (COP9 signalosome). It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development.
rpsblast_kog gnl|CDD|38361 12 216 + 205 Gaps:3 78.46 260 55.88 6e-74 KOG3151 KOG3151 KOG3151 26S proteasome regulatory complex subunit RPN12/PSMD8 [Posttranslational modification protein turnover chaperones].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 53 189 137 PF10075 none COP9 signalosome, subunit CSN8 none
PANTHER 12 216 205 PTHR12387 none none IPR006746

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting