Protein : Qrob_P0373570.2 Q. robur
Protein Identifier  ? Qrob_P0373570.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) PTHR18934:SF85 - FI05376P (PTHR18934:SF85) Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 512  
Kegg Orthology  K12818
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0008026 ATP-dependent helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO:0004386 helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1602810 9 510 + 502 Gaps:124 53.19 1177 70.61 0.0 ATP-dependent RNA helicase putative
blastp_kegg lcl|cit:102631410 9 510 + 502 Gaps:124 53.23 1176 70.93 0.0 probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like
blastp_kegg lcl|cic:CICLE_v10024740mg 9 510 + 502 Gaps:124 53.23 1176 70.93 0.0 hypothetical protein
blastp_kegg lcl|vvi:100241659 9 510 + 502 Gaps:124 53.28 1175 70.77 0.0 probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like
blastp_kegg lcl|gmx:100781090 9 510 + 502 Gaps:124 52.30 1197 70.29 0.0 probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like
blastp_kegg lcl|pop:POPTR_0015s05960g 9 510 + 502 Gaps:124 53.19 1177 70.61 0.0 ATP-dependent RNA helicase family protein
blastp_kegg lcl|cam:101508671 9 510 + 502 Gaps:124 52.04 1203 70.13 0.0 probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like
blastp_kegg lcl|gmx:100790809 9 510 + 502 Gaps:124 52.04 1203 70.29 0.0 probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like
blastp_kegg lcl|pvu:PHAVU_001G008600g 9 510 + 502 Gaps:124 52.12 1201 69.97 0.0 hypothetical protein
blastp_kegg lcl|mdm:103411719 9 510 + 502 Gaps:124 58.95 1062 70.29 0.0 probable pre-mRNA-splicing factor ATP-dependent RNA helicase
blastp_pdb 3kx2_A 32 510 + 479 Gaps:140 80.44 767 40.19 6e-139 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 3kx2_B 32 510 + 479 Gaps:140 80.44 767 40.19 6e-139 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 2xau_B 32 510 + 479 Gaps:140 79.82 773 40.19 7e-139 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 2xau_A 32 510 + 479 Gaps:140 79.82 773 40.19 7e-139 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 3i4u_A 325 510 + 186 Gaps:24 77.78 270 58.10 2e-84 mol:protein length:270 ATP-dependent RNA helicase DHX8
blastp_pdb 3llm_B 27 164 + 138 Gaps:38 73.19 235 28.49 2e-15 mol:protein length:235 ATP-dependent RNA helicase A
blastp_pdb 3llm_A 27 164 + 138 Gaps:38 73.19 235 28.49 2e-15 mol:protein length:235 ATP-dependent RNA helicase A
blastp_uniprot_sprot sp|Q38953|DHX8_ARATH 9 510 + 502 Gaps:124 53.60 1168 69.33 0.0 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS Arabidopsis thaliana GN At3g26560 PE 1 SV 2
blastp_uniprot_sprot sp|Q54F05|DHX8_DICDI 18 510 + 493 Gaps:121 52.93 1160 58.14 0.0 ATP-dependent RNA helicase dhx8 OS Dictyostelium discoideum GN dhx8 PE 3 SV 1
blastp_uniprot_sprot sp|Q14562|DHX8_HUMAN 19 510 + 492 Gaps:121 50.25 1220 55.14 0.0 ATP-dependent RNA helicase DHX8 OS Homo sapiens GN DHX8 PE 1 SV 1
blastp_uniprot_sprot sp|A2A4P0|DHX8_MOUSE 19 510 + 492 Gaps:121 49.28 1244 55.14 0.0 ATP-dependent RNA helicase DHX8 OS Mus musculus GN Dhx8 PE 2 SV 1
blastp_uniprot_sprot sp|Q09530|MOG5_CAEEL 19 510 + 492 Gaps:121 51.08 1200 51.71 0.0 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS Caenorhabditis elegans GN mog-5 PE 1 SV 1
blastp_uniprot_sprot sp|O42643|PRP22_SCHPO 17 510 + 494 Gaps:123 52.83 1168 48.30 0.0 Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp22 PE 1 SV 1
blastp_uniprot_sprot sp|P24384|PRP22_YEAST 16 510 + 495 Gaps:121 53.80 1145 43.99 2e-168 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PRP22 PE 1 SV 1
blastp_uniprot_sprot sp|Q54MH3|DHX16_DICDI 23 510 + 488 Gaps:122 55.15 1106 43.77 3e-168 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Dictyostelium discoideum GN dhx16 PE 3 SV 1
blastp_uniprot_sprot sp|O60231|DHX16_HUMAN 25 510 + 486 Gaps:124 58.41 1041 42.27 1e-161 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Homo sapiens GN DHX16 PE 1 SV 2
blastp_uniprot_sprot sp|Q7YR39|DHX16_PANTR 25 510 + 486 Gaps:124 58.24 1044 42.27 1e-161 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Pan troglodytes GN DHX16 PE 3 SV 1
rpsblast_cdd gnl|CDD|31829 13 510 + 498 Gaps:157 77.28 845 32.01 1e-121 COG1643 HrpA HrpA-like helicases [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|162629 33 510 + 478 Gaps:131 47.00 1283 31.18 3e-85 TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long while its paralog HrpB also uncharacterized is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
rpsblast_cdd gnl|CDD|182986 33 508 + 476 Gaps:132 46.68 1294 29.97 3e-75 PRK11131 PRK11131 ATP-dependent RNA helicase HrpA Provisional.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 430 510 81 PF07717 none Oligonucleotide/oligosaccharide-binding (OB)-fold IPR011709
SUPERFAMILY 26 439 414 SSF52540 none none IPR027417
ProSiteProfiles 53 177 125 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
SMART 33 188 156 SM00487 none DEAD-like helicases superfamily IPR014001
PANTHER 15 510 496 PTHR18934:SF85 none none none
ProSitePatterns 119 128 10 PS00690 none DEAH-box subfamily ATP-dependent helicases signature. IPR002464
Pfam 330 376 47 PF04408 none Helicase associated domain (HA2) IPR007502
Gene3D 34 78 45 G3DSA:3.40.50.300 none none IPR027417
Gene3D 79 161 83 G3DSA:3.40.50.300 none none IPR027417
PANTHER 15 510 496 PTHR18934 none none none
SMART 329 395 67 SM00847 none Helicase associated domain (HA2) Add an annotation IPR007502

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting