Protein : Qrob_P0373340.2 Q. robur
Protein Identifier  ? Qrob_P0373340.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR12403:SF11 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2-LIKE PROTEIN (PTHR12403:SF11) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 144  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0006888 ER to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100241847 1 143 + 143 none 100.00 143 98.60 3e-99 trafficking protein particle complex subunit 2-like protein
blastp_kegg lcl|cic:CICLE_v10029529mg 1 143 + 143 none 100.00 143 97.90 5e-99 hypothetical protein
blastp_kegg lcl|cit:102622602 1 143 + 143 none 100.00 143 97.90 5e-99 trafficking protein particle complex subunit 2-like protein-like
blastp_kegg lcl|gmx:100805386 1 143 + 143 none 100.00 143 97.20 1e-97 trafficking protein particle complex subunit 2-like protein-like
blastp_kegg lcl|pop:POPTR_0009s13910g 1 143 + 143 none 100.00 143 97.90 1e-97 POPTRDRAFT_821082 hypothetical protein
blastp_kegg lcl|gmx:100527601 1 143 + 143 none 100.00 143 96.50 3e-97 uncharacterized LOC100527601
blastp_kegg lcl|tcc:TCM_006598 1 143 + 143 none 100.00 143 96.50 6e-97 SNARE-like superfamily protein
blastp_kegg lcl|pvu:PHAVU_008G049900g 1 143 + 143 none 100.00 143 95.80 1e-96 hypothetical protein
blastp_kegg lcl|mdm:103440795 1 143 + 143 none 100.00 143 95.10 2e-96 trafficking protein particle complex subunit 2-like protein
blastp_kegg lcl|mtr:MTR_7g081040 1 143 + 143 none 100.00 143 95.80 2e-96 Trafficking protein particle complex subunit 2-like protein
blastp_pdb 2j3w_C 7 135 + 129 Gaps:26 89.44 142 33.07 1e-08 mol:protein length:142 TRAFFICKING PROTEIN PARTICLE COMPLEX PROTEIN
blastp_pdb 2j3w_A 7 135 + 129 Gaps:26 89.44 142 33.07 1e-08 mol:protein length:142 TRAFFICKING PROTEIN PARTICLE COMPLEX PROTEIN
blastp_pdb 1h3q_A 7 135 + 129 Gaps:26 90.71 140 33.07 1e-08 mol:protein length:140 SEDLIN
blastp_uniprot_sprot sp|Q54CU7|TPC2L_DICDI 2 137 + 136 Gaps:7 97.86 140 49.64 5e-44 Trafficking protein particle complex subunit 2-like protein OS Dictyostelium discoideum GN trappc2l PE 3 SV 1
blastp_uniprot_sprot sp|B2RYU6|TPC2L_RAT 1 134 + 134 Gaps:3 97.12 139 48.15 3e-41 Trafficking protein particle complex subunit 2-like protein OS Rattus norvegicus GN Trappc2l PE 2 SV 1
blastp_uniprot_sprot sp|Q9JME7|TPC2L_MOUSE 1 134 + 134 Gaps:3 97.12 139 48.15 5e-41 Trafficking protein particle complex subunit 2-like protein OS Mus musculus GN Trappc2l PE 2 SV 1
blastp_uniprot_sprot sp|Q5M8X5|TPC2L_XENTR 1 134 + 134 Gaps:3 97.12 139 48.89 1e-40 Trafficking protein particle complex subunit 2-like protein OS Xenopus tropicalis GN trappc2l PE 2 SV 1
blastp_uniprot_sprot sp|A6H7F7|TPC2L_BOVIN 1 134 + 134 Gaps:3 97.12 139 48.15 2e-40 Trafficking protein particle complex subunit 2-like protein OS Bos taurus GN TRAPPC2L PE 2 SV 1
blastp_uniprot_sprot sp|Q9UL33|TPC2L_HUMAN 1 134 + 134 Gaps:4 97.14 140 47.79 1e-39 Trafficking protein particle complex subunit 2-like protein OS Homo sapiens GN TRAPPC2L PE 1 SV 1
blastp_uniprot_sprot sp|B5FXJ6|TPC2L_TAEGU 1 134 + 134 Gaps:3 97.12 139 47.41 2e-39 Trafficking protein particle complex subunit 2-like protein OS Taeniopygia guttata GN TRAPPC2L PE 2 SV 1
blastp_uniprot_sprot sp|B5XGE7|TPC2L_SALSA 1 134 + 134 Gaps:3 97.12 139 45.93 1e-38 Trafficking protein particle complex subunit 2-like protein OS Salmo salar GN trappc2l PE 2 SV 1
blastp_uniprot_sprot sp|Q5RBK9|TPC2L_PONAB 1 134 + 134 Gaps:29 96.33 109 48.57 9e-25 Trafficking protein particle complex subunit 2-like protein OS Pongo abelii GN TRAPPC2L PE 3 SV 1
blastp_uniprot_sprot sp|O13732|YDOC_SCHPO 2 138 + 137 Gaps:10 95.27 148 29.79 1e-13 Uncharacterized protein C15A10.12c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC15A10.12c PE 4 SV 2
rpsblast_cdd gnl|CDD|203060 7 136 + 130 Gaps:11 100.00 127 35.43 2e-39 pfam04628 Sedlin_N Sedlin N-terminal conserved region. Mutations in this protein are associated with the X-linked spondyloepiphyseal dysplasia tarda syndrome (OMIM:313400). This family represents an N-terminal conserved region.
rpsblast_cdd gnl|CDD|35162 6 135 + 130 Gaps:16 94.12 136 21.88 4e-07 COG5603 TRS20 Subunit of TRAPP an ER-Golgi tethering complex [Cell motility and secretion].
rpsblast_kog gnl|CDD|38654 1 118 + 118 Gaps:2 99.17 121 57.50 2e-45 KOG3444 KOG3444 KOG3444 Uncharacterized conserved protein [Function unknown].
rpsblast_kog gnl|CDD|38697 1 140 + 140 Gaps:17 100.00 139 28.06 3e-10 KOG3487 KOG3487 KOG3487 TRAPP 20 K subunit [Intracellular trafficking secretion and vesicular transport].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 2 137 136 SSF64356 none none IPR011012
Pfam 7 135 129 PF04628 none Sedlin, N-terminal conserved region IPR006722
Gene3D 1 136 136 G3DSA:3.30.450.70 none none none
PANTHER 1 143 143 PTHR12403 none none IPR006722
PANTHER 1 143 143 PTHR12403:SF11 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting