Protein : Qrob_P0371600.2 Q. robur
Protein Identifier  ? Qrob_P0371600.2 Organism . Name  Quercus robur
Score  93.0 Score Type  egn
Protein Description  (M=1) PF12090 - Spt20 family Gene Prediction Quality  validated
Protein length 

Sequence

Length: 252  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003712 transcription cofactor activity Interacting selectively and non-covalently with a regulatory transcription factor and also with the basal transcription machinery in order to modulate transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery.
GO:0000124 SAGA complex A SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof; additional polypeptides include Spt group, consisting of Spt7, Spt3, and Spt20/Ada5, which interact with the TATA-binding protein (TBP); the Ada group, consisting of Ada1, Ada2, Ada3, Ada4/Gcn5, and Ada5/Spt20, which is functionally linked to the nucleosomal HAT activity; Tra1, an ATM/PI-3 kinase-related protein that targets DNA-bound activators for recruitment to promoters; the TBP-associated factor (TAF) proteins, consisting of Taf5, Taf6, Taf9, Taf10, and Taf12, which mediate nucleosomal HAT activity and are thought to help recruit the basal transcription machinery.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103341667 1 240 + 240 Gaps:7 40.81 571 59.66 6e-79 uncharacterized LOC103341667
blastp_kegg lcl|pxb:103949464 1 232 + 232 Gaps:9 35.92 632 59.47 6e-78 uncharacterized LOC103949464
blastp_kegg lcl|pmum:103327598 1 232 + 232 Gaps:17 18.26 1342 51.02 4e-66 mediator of RNA polymerase II transcription subunit 15
blastp_kegg lcl|fve:101306653 1 232 + 232 Gaps:19 17.58 1314 51.95 1e-65 uncharacterized protein LOC101306653
blastp_kegg lcl|pper:PRUPE_ppa000279mg 1 232 + 232 Gaps:18 17.02 1351 52.61 3e-64 hypothetical protein
blastp_kegg lcl|mdm:103443662 1 232 + 232 Gaps:26 17.41 1344 52.14 2e-63 uncharacterized LOC103443662
blastp_kegg lcl|pxb:103929267 1 232 + 232 Gaps:26 17.29 1353 50.85 1e-61 uncharacterized LOC103929267
blastp_kegg lcl|pxb:103929258 1 232 + 232 Gaps:26 17.29 1353 50.85 1e-61 uncharacterized LOC103929258
blastp_kegg lcl|pxb:103929249 1 232 + 232 Gaps:26 17.29 1353 50.85 1e-61 uncharacterized LOC103929249
blastp_kegg lcl|gmx:100810803 1 232 + 232 Gaps:25 16.82 1326 53.81 1e-61 mediator of RNA polymerase II transcription subunit 15-like
blastp_uniprot_sprot sp|Q5ZM71|SP20H_CHICK 82 216 + 135 Gaps:17 19.51 687 32.84 7e-06 Transcription factor SPT20 homolog OS Gallus gallus GN SUPT20H PE 2 SV 1
rpsblast_cdd gnl|CDD|204824 77 223 + 147 Gaps:35 90.05 191 26.16 6e-17 pfam12090 Spt20 Spt20 family. This presumed domain is found in the Spt20 proteins from both human and yeast. The Spt20 protein is part of the SAGA complex which is a large cmplex mediating histone deacetylation. Yeast Spt20 has been shown to play a role in structural integrity of the SAGA complex as as no intact SAGA could be purified in spt20 deletion strains.

1 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 76 221 146 PF12090 none Spt20 family IPR021950

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting