Protein : Qrob_P0371510.2 Q. robur
Protein Identifier  ? Qrob_P0371510.2 Organism . Name  Quercus robur
Score  92.3 Score Type  egn
Protein Description  (M=5) PTHR31636:SF13 - SCARECROW-LIKE PROTEIN 3 (PTHR31636:SF13) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 395  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0000989 transcription factor binding transcription factor activity Interacting selectively and non-covalently with a specific transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100263490 1 393 + 393 Gaps:52 99.52 417 62.17 3e-173 scarecrow-like protein 3-like
blastp_kegg lcl|tcc:TCM_018964 1 392 + 392 Gaps:36 99.52 418 60.82 7e-170 GRAS family transcription factor
blastp_kegg lcl|rcu:RCOM_0789650 1 392 + 392 Gaps:38 99.52 416 60.14 2e-165 DELLA protein SLR1 putative
blastp_kegg lcl|pper:PRUPEppa1027219mg 33 392 + 360 Gaps:33 94.57 405 63.71 5e-159 hypothetical protein
blastp_kegg lcl|pmum:103329575 33 392 + 360 Gaps:33 93.87 408 62.40 6e-158 scarecrow-like protein 3
blastp_kegg lcl|pop:POPTR_0004s21850g 1 375 + 375 Gaps:34 87.36 459 61.60 2e-155 hypothetical protein
blastp_kegg lcl|brp:103871348 2 392 + 391 Gaps:46 96.17 444 41.45 2e-91 scarecrow-like protein 3
blastp_kegg lcl|cit:102607699 17 392 + 376 Gaps:50 93.78 450 41.00 2e-91 scarecrow-like protein 3-like
blastp_kegg lcl|pop:POPTR_0001s06090g 16 392 + 377 Gaps:74 93.91 476 38.70 3e-91 POPTRDRAFT_797106 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10015219mg 17 392 + 376 Gaps:50 93.78 450 40.76 1e-90 hypothetical protein
blastp_uniprot_sprot sp|Q9LPR8|SCL3_ARATH 33 392 + 360 Gaps:77 89.83 482 37.64 5e-84 Scarecrow-like protein 3 OS Arabidopsis thaliana GN SCL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C8Y3|RGL1_ARATH 34 392 + 359 Gaps:64 70.65 511 34.63 1e-54 DELLA protein RGL1 OS Arabidopsis thaliana GN RGL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8S4W7|GAI1_VITVI 22 392 + 371 Gaps:75 64.41 590 34.21 4e-54 DELLA protein GAI1 OS Vitis vinifera GN GAI1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LF53|RGL3_ARATH 35 392 + 358 Gaps:71 69.79 523 34.52 1e-52 DELLA protein RGL3 OS Arabidopsis thaliana GN RGL3 PE 1 SV 1
blastp_uniprot_sprot sp|Q5BN23|RGA1_BRACM 2 392 + 391 Gaps:78 71.73 573 32.36 2e-52 DELLA protein RGA1 OS Brassica campestris GN RGA1 PE 1 SV 1
blastp_uniprot_sprot sp|Q84TQ7|GAI_GOSHI 6 388 + 383 Gaps:86 74.67 537 32.92 1e-49 DELLA protein GAI OS Gossypium hirsutum GN GAI PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXW1|RGL2_ARATH 34 392 + 359 Gaps:69 68.01 547 32.26 7e-49 DELLA protein RGL2 OS Arabidopsis thaliana GN RGL2 PE 1 SV 2
blastp_uniprot_sprot sp|Q5BN22|RGA2_BRACM 34 392 + 359 Gaps:66 63.39 579 32.97 1e-48 DELLA protein RGA2 OS Brassica campestris GN RGA2 PE 3 SV 1
blastp_uniprot_sprot sp|Q9ST48|DWRF8_MAIZE 25 392 + 368 Gaps:76 62.86 630 32.07 2e-48 DELLA protein DWARF8 OS Zea mays GN D8 PE 1 SV 1
blastp_uniprot_sprot sp|Q6EI06|GAIP_CUCMA 34 392 + 359 Gaps:67 63.21 579 34.15 5e-48 DELLA protein GAIP OS Cucurbita maxima GN GAIP PE 2 SV 1
rpsblast_cdd gnl|CDD|202673 41 392 + 352 Gaps:55 99.73 372 40.97 1e-81 pfam03514 GRAS GRAS family transcription factor. Sequence analysis of the products of the GRAS (GAI RGA SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect loss of a ground tissue layer in the root. The PAT1 protein is involved in phytochrome A signal transduction.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 11 231 221 PTHR31636 none none none
PANTHER 247 394 148 PTHR31636 none none none
ProSiteProfiles 1 377 377 PS50985 none GRAS family profile. IPR005202
Pfam 140 392 253 PF03514 none GRAS domain family IPR005202
PANTHER 247 394 148 PTHR31636:SF13 none none IPR030008
PANTHER 11 231 221 PTHR31636:SF13 none none IPR030008

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting