Protein : Qrob_P0371350.2 Q. robur
Protein Identifier  ? Qrob_P0371350.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR31673:SF2 - COBRA-LIKE PROTEIN 4 (PTHR31673:SF2) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 433  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0010215 cellulose microfibril organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall.
GO:0016049 cell growth The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
GO:0031225 anchored component of membrane The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_018950 1 432 + 432 none 100.00 432 87.73 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
blastp_kegg lcl|fve:101313038 1 432 + 432 Gaps:1 100.00 433 84.30 0.0 COBRA-like protein 4-like
blastp_kegg lcl|cmo:103502426 1 422 + 422 none 97.46 433 87.44 0.0 COBRA-like protein 4
blastp_kegg lcl|vvi:100244586 11 432 + 422 Gaps:1 96.12 438 86.70 0.0 COBRA-like protein 4-like
blastp_kegg lcl|pper:PRUPE_ppa024465mg 1 432 + 432 none 100.00 432 82.87 0.0 hypothetical protein
blastp_kegg lcl|gmx:100783410 1 432 + 432 Gaps:1 100.00 431 82.37 0.0 COBRA-like protein 4-like
blastp_kegg lcl|pop:POPTR_0015s07110g 1 418 + 418 Gaps:3 92.94 453 85.04 0.0 phytochelatin synthetase-like family protein
blastp_kegg lcl|gmx:100784352 1 432 + 432 Gaps:1 100.00 431 82.13 0.0 COBRA-like protein 4-like
blastp_kegg lcl|csv:101217724 11 410 + 400 none 88.69 451 89.75 0.0 COBRA-like protein 4-like
blastp_kegg lcl|pvu:PHAVU_008G029000g 1 432 + 432 Gaps:2 100.00 432 82.64 0.0 hypothetical protein
blastp_uniprot_sprot sp|Q9LFW3|COBL4_ARATH 19 432 + 414 Gaps:2 95.59 431 84.95 0.0 COBRA-like protein 4 OS Arabidopsis thaliana GN COBL4 PE 2 SV 2
blastp_uniprot_sprot sp|Q10JL1|COBL5_ORYSJ 2 428 + 427 Gaps:36 98.93 468 66.74 0.0 COBRA-like protein 5 OS Oryza sativa subsp. japonica GN BC1 PE 2 SV 1
blastp_uniprot_sprot sp|A2XHZ9|COBL5_ORYSI 2 428 + 427 Gaps:36 98.93 468 66.74 0.0 COBRA-like protein 5 OS Oryza sativa subsp. indica GN BC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6Z4G7|COBL6_ORYSJ 19 430 + 412 Gaps:19 95.57 451 68.91 0.0 COBRA-like protein 6 OS Oryza sativa subsp. japonica GN BC1L7 PE 3 SV 1
blastp_uniprot_sprot sp|Q94KT8|COBRA_ARATH 3 417 + 415 Gaps:12 91.45 456 67.87 0.0 Protein COBRA OS Arabidopsis thaliana GN COB PE 2 SV 1
blastp_uniprot_sprot sp|Q60E70|COBL3_ORYSJ 17 429 + 413 Gaps:9 91.90 457 69.52 0.0 COBRA-like protein 3 OS Oryza sativa subsp. japonica GN BC1L4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SRT7|COBL1_ARATH 1 429 + 429 Gaps:12 95.80 452 65.36 0.0 COBRA-like protein 1 OS Arabidopsis thaliana GN COBL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6Z4G8|COBL1_ORYSJ 9 429 + 421 Gaps:8 95.74 446 65.11 0.0 COBRA-like protein 1 OS Oryza sativa subsp. japonica GN BC1L6 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L8Q7|COBL2_ARATH 1 427 + 427 Gaps:22 100.00 441 63.95 0.0 COBRA-like protein 2 OS Arabidopsis thaliana GN COBL2 PE 1 SV 2
blastp_uniprot_sprot sp|Q75IW1|COBL2_ORYSJ 10 425 + 416 Gaps:5 91.48 458 65.16 0.0 COBRA-like protein 2 OS Oryza sativa subsp. japonica GN BC1L2 PE 2 SV 1
rpsblast_cdd gnl|CDD|191108 43 207 + 165 Gaps:4 100.00 169 65.68 2e-78 pfam04833 COBRA COBRA-like protein. Family of plant proteins are designated COBRA-like (COBL) proteins. The 12 Arabidopsis members of the family are all GPI-liked. Some members of this family are annotated as phytochelatin synthase but these annotations are incorrect.

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 19 19 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 7 429 423 PTHR31673 none none none
PIRSF 1 432 432 PIRSF038122 none none IPR006918
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Pfam 43 207 165 PF04833 none COBRA-like protein IPR006918
Phobius 3 14 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
ProDom 27 205 179 PD140986 none PHYTOCHELATIN GLYCOPROTEIN COBRA-LIKE PRECURSOR SIGNAL MEMBRANE GPI-ANCHOR LIPOPROTEIN SYNTHETASE SYNTHETASE-LIKE IPR006918
PANTHER 7 429 423 PTHR31673:SF2 none none none
Phobius 414 431 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 15 19 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 20 413 394 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 432 432 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

2 Localization

Analysis Start End Length
SignalP_EUK 1 19 18
SignalP_GRAM_NEGATIVE 1 20 19

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting