Protein : Qrob_P0371340.2 Q. robur
Protein Identifier  ? Qrob_P0371340.2 Organism . Name  Quercus robur
Score  93.0 Score Type  egn
Protein Description  (M=3) PTHR31673:SF3 - COBRA-LIKE EXTRACELLULAR GLYCOSYL-PHOSPHATIDYL INOSITOL-ANCHORED FAMILY PROTEIN-RELATED (PTHR31673:SF3) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 448  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0010215 cellulose microfibril organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall.
GO:0016049 cell growth The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
GO:0031225 anchored component of membrane The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa005522mg 24 447 + 424 Gaps:1 93.20 456 81.41 0.0 hypothetical protein
blastp_kegg lcl|pmum:103329569 24 447 + 424 Gaps:1 93.20 456 81.41 0.0 COBRA-like protein 1
blastp_kegg lcl|vvi:100263436 26 434 + 409 Gaps:1 89.91 456 84.15 0.0 protein COBRA-like
blastp_kegg lcl|vvi:100263971 22 447 + 426 Gaps:1 93.64 456 79.39 0.0 protein COBRA-like
blastp_kegg lcl|pxb:103962747 26 447 + 422 Gaps:1 92.56 457 81.32 0.0 COBRA-like protein 1
blastp_kegg lcl|mdm:103417080 26 447 + 422 Gaps:1 92.56 457 80.85 0.0 COBRA-like protein 1
blastp_kegg lcl|mdm:103404648 26 447 + 422 Gaps:1 92.56 457 80.85 0.0 COBRA-like protein 1
blastp_kegg lcl|pxb:103937925 26 447 + 422 Gaps:1 92.76 456 79.91 0.0 protein COBRA-like
blastp_kegg lcl|fve:101307205 18 447 + 430 Gaps:5 95.39 456 77.47 0.0 protein COBRA-like
blastp_kegg lcl|mdm:103437903 26 447 + 422 Gaps:1 92.76 456 79.43 0.0 protein COBRA-like
blastp_uniprot_sprot sp|Q6Z4G8|COBL1_ORYSJ 2 447 + 446 Gaps:4 99.55 446 75.45 0.0 COBRA-like protein 1 OS Oryza sativa subsp. japonica GN BC1L6 PE 2 SV 1
blastp_uniprot_sprot sp|Q94KT8|COBRA_ARATH 19 430 + 412 Gaps:10 92.54 456 73.93 0.0 Protein COBRA OS Arabidopsis thaliana GN COB PE 2 SV 1
blastp_uniprot_sprot sp|Q9SRT7|COBL1_ARATH 1 437 + 437 Gaps:8 98.01 452 72.23 0.0 COBRA-like protein 1 OS Arabidopsis thaliana GN COBL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q60E70|COBL3_ORYSJ 24 447 + 424 Gaps:6 93.22 457 74.65 0.0 COBRA-like protein 3 OS Oryza sativa subsp. japonica GN BC1L4 PE 2 SV 1
blastp_uniprot_sprot sp|Q75IW1|COBL2_ORYSJ 21 443 + 423 Gaps:5 92.58 458 73.58 0.0 COBRA-like protein 2 OS Oryza sativa subsp. japonica GN BC1L2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L8Q7|COBL2_ARATH 27 443 + 417 Gaps:6 94.10 441 74.46 0.0 COBRA-like protein 2 OS Arabidopsis thaliana GN COBL2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LFW3|COBL4_ARATH 26 440 + 415 Gaps:6 95.82 431 68.28 0.0 COBRA-like protein 4 OS Arabidopsis thaliana GN COBL4 PE 2 SV 2
blastp_uniprot_sprot sp|Q6Z4G7|COBL6_ORYSJ 25 445 + 421 Gaps:17 96.23 451 63.82 0.0 COBRA-like protein 6 OS Oryza sativa subsp. japonica GN BC1L7 PE 3 SV 1
blastp_uniprot_sprot sp|Q10JL1|COBL5_ORYSJ 18 422 + 405 Gaps:29 92.74 468 61.29 0.0 COBRA-like protein 5 OS Oryza sativa subsp. japonica GN BC1 PE 2 SV 1
blastp_uniprot_sprot sp|A2XHZ9|COBL5_ORYSI 18 422 + 405 Gaps:29 92.74 468 61.29 0.0 COBRA-like protein 5 OS Oryza sativa subsp. indica GN BC1 PE 2 SV 1
rpsblast_cdd gnl|CDD|191108 52 216 + 165 Gaps:4 100.00 169 64.50 2e-81 pfam04833 COBRA COBRA-like protein. Family of plant proteins are designated COBRA-like (COBL) proteins. The 12 Arabidopsis members of the family are all GPI-liked. Some members of this family are annotated as phytochelatin synthase but these annotations are incorrect.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 17 447 431 PTHR31673 none none none
Phobius 447 447 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 52 216 165 PF04833 none COBRA-like protein IPR006918
Phobius 1 426 426 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProDom 19 214 196 PD140986 none PHYTOCHELATIN GLYCOPROTEIN COBRA-LIKE PRECURSOR SIGNAL MEMBRANE GPI-ANCHOR LIPOPROTEIN SYNTHETASE SYNTHETASE-LIKE IPR006918
Phobius 427 446 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 17 447 431 PTHR31673:SF3 none none none
PIRSF 1 447 447 PIRSF038122 none none IPR006918

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting