Protein : Qrob_P0371140.2 Q. robur
Protein Identifier  ? Qrob_P0371140.2 Organism . Name  Quercus robur
Score  67.0 Score Type  egn
Protein Description  (M=2) K11346 - inhibitor of growth protein 4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 161  
Kegg Orthology  K11346
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0016568 chromatin modification The alteration of DNA, protein, or sometimes RNA, in chromatin, which may result in changing the chromatin structure.
GO:0035064 methylated histone binding Interacting selectively and non-covalently with a histone protein in which a residue has been modified by methylation. Histones are any of a group of water-soluble proteins found in association with the DNA of plant and animal chromosomes.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103944412 1 149 + 149 Gaps:21 48.30 265 79.69 2e-57 PHD finger protein ING2
blastp_kegg lcl|mdm:103414841 1 149 + 149 Gaps:21 48.30 265 79.69 2e-57 PHD finger protein ING2-like
blastp_kegg lcl|vvi:100854793 1 149 + 149 Gaps:26 47.49 259 79.67 2e-57 PHD finger protein ING2-like
blastp_kegg lcl|pvu:PHAVU_001G109900g 1 149 + 149 Gaps:18 48.88 268 73.28 3e-57 hypothetical protein
blastp_kegg lcl|pop:POPTR_0019s04940g 1 149 + 149 Gaps:16 46.50 286 77.44 7e-57 POPTRDRAFT_780260 PHD finger family protein
blastp_kegg lcl|pop:POPTR_0013s05540g 1 149 + 149 Gaps:16 48.72 273 75.94 1e-56 POPTRDRAFT_571214 PHD finger family protein
blastp_kegg lcl|gmx:100787916 1 149 + 149 Gaps:18 48.88 268 72.52 2e-55 inhibitor of growth protein 4-like
blastp_kegg lcl|cmo:103485975 1 149 + 149 Gaps:22 48.29 263 76.38 3e-55 PHD finger protein ING2
blastp_kegg lcl|pmum:103338980 1 149 + 149 Gaps:19 48.87 266 76.92 8e-55 PHD finger protein ING2
blastp_kegg lcl|pper:PRUPE_ppa010040mg 1 149 + 149 Gaps:19 48.87 266 76.15 8e-55 hypothetical protein
blastp_uniprot_sprot sp|B3H615|ING2_ARATH 1 149 + 149 Gaps:19 49.62 262 70.00 3e-49 PHD finger protein ING2 OS Arabidopsis thaliana GN ING2 PE 1 SV 1
rpsblast_cdd gnl|CDD|205182 9 137 + 129 Gaps:33 92.31 104 37.50 3e-07 pfam12998 ING Inhibitor of growth proteins N-terminal histone-binding. Histones undergo numerous post-translational modifications including acetylation and methylation at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterized C-terminal PHD-type zinc-finger domain binding with lysine 4-tri-methylated histone H3 (H3K4me3) as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently together they increase the apparent association of the ING for the H3 tail.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 87 149 63 PTHR10333 none none IPR028651
Pfam 9 137 129 PF12998 none Inhibitor of growth proteins N-terminal histone-binding IPR024610
Coils 24 45 22 Coil none none none
PANTHER 1 55 55 PTHR10333 none none IPR028651
PANTHER 1 55 55 PTHR10333:SF47 none none IPR028652
PANTHER 87 149 63 PTHR10333:SF47 none none IPR028652

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting