Protein : Qrob_P0369730.2 Q. robur
Protein Identifier  ? Qrob_P0369730.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=2) K07936 - GTP-binding nuclear protein Ran Code Enzyme  EC:3.6.5.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 223  
Kegg Orthology  K07936
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0 Synonyms

9 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0007165 signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0007264 small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO:0003924 GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO:0006913 nucleocytoplasmic transport The directed movement of molecules between the nucleus and the cytoplasm.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103488283 5 222 + 218 Gaps:2 97.74 221 91.67 1e-144 GTP-binding nuclear protein Ran1A-like
blastp_kegg lcl|csv:101227588 5 222 + 218 Gaps:2 97.74 221 91.67 1e-144 GTP-binding nuclear protein Ran-3-like
blastp_kegg lcl|csv:101219711 5 222 + 218 Gaps:2 97.74 221 91.67 1e-144 GTP-binding nuclear protein Ran-3-like
blastp_kegg lcl|crb:CARUB_v10027091mg 11 222 + 212 none 95.93 221 91.04 5e-143 hypothetical protein
blastp_kegg lcl|mdm:103424931 11 222 + 212 none 95.93 221 91.04 2e-142 GTP-binding nuclear protein Ran-3
blastp_kegg lcl|ath:AT5G55190 11 222 + 212 none 95.93 221 90.57 2e-142 RAN3 GTP-binding nuclear protein Ran-3
blastp_kegg lcl|cic:CICLE_v10009427mg 11 222 + 212 none 95.93 221 91.04 3e-142 hypothetical protein
blastp_kegg lcl|cit:102608440 11 222 + 212 none 95.93 221 91.04 3e-142 GTP-binding nuclear protein Ran-3-like
blastp_kegg lcl|aly:ARALYDRAFT_918663 11 222 + 212 none 95.93 221 90.57 3e-142 hypothetical protein
blastp_kegg lcl|brp:103851894 11 222 + 212 none 95.93 221 90.57 5e-142 GTP-binding nuclear protein Ran-3
blastp_pdb 3m1i_A 13 218 + 206 none 94.06 219 79.13 7e-119 mol:protein length:219 GTP-binding nuclear protein GSP1/CNR1
blastp_pdb 1byu_B 15 220 + 206 none 95.37 216 77.18 4e-118 mol:protein length:216 PROTEIN (GTP-BINDING PROTEIN RAN)
blastp_pdb 1byu_A 15 220 + 206 none 95.37 216 77.18 4e-118 mol:protein length:216 PROTEIN (GTP-BINDING PROTEIN RAN)
blastp_pdb 3ch5_A 15 220 + 206 none 95.37 216 76.70 5e-117 mol:protein length:216 GTP-binding nuclear protein Ran
blastp_pdb 3a6p_H 15 220 + 206 none 95.37 216 76.70 5e-117 mol:protein length:216 GTP-binding nuclear protein Ran
blastp_pdb 3a6p_C 15 220 + 206 none 95.37 216 76.70 5e-117 mol:protein length:216 GTP-binding nuclear protein Ran
blastp_pdb 1qbk_C 15 220 + 206 none 95.37 216 76.70 5e-117 mol:protein length:216 RAN
blastp_pdb 1k5g_J 15 220 + 206 none 95.37 216 76.70 5e-117 mol:protein length:216 GTP-binding nuclear protein RAN
blastp_pdb 1k5g_G 15 220 + 206 none 95.37 216 76.70 5e-117 mol:protein length:216 GTP-binding nuclear protein RAN
blastp_pdb 1k5g_D 15 220 + 206 none 95.37 216 76.70 5e-117 mol:protein length:216 GTP-binding nuclear protein RAN
blastp_uniprot_sprot sp|P41918|RANA1_TOBAC 11 222 + 212 none 95.93 221 91.51 2e-144 GTP-binding nuclear protein Ran-A1 OS Nicotiana tabacum GN RAN-A1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8H156|RAN3_ARATH 11 222 + 212 none 95.93 221 90.57 7e-144 GTP-binding nuclear protein Ran-3 OS Arabidopsis thaliana GN RAN3 PE 1 SV 2
blastp_uniprot_sprot sp|P38546|RAN1_SOLLC 11 222 + 212 none 95.93 221 90.57 2e-142 GTP-binding nuclear protein Ran1 OS Solanum lycopersicum GN RAN1 PE 2 SV 1
blastp_uniprot_sprot sp|P38547|RAN2_SOLLC 11 222 + 212 none 95.93 221 90.57 3e-142 GTP-binding nuclear protein Ran2 OS Solanum lycopersicum GN RAN2 PE 2 SV 1
blastp_uniprot_sprot sp|P41919|RANB1_TOBAC 11 222 + 212 none 95.93 221 90.09 1e-141 GTP-binding nuclear protein Ran-B1 OS Nicotiana tabacum GN RAN-B1 PE 2 SV 1
blastp_uniprot_sprot sp|P38548|RAN_VICFA 11 222 + 212 none 95.93 221 89.15 8e-141 GTP-binding nuclear protein Ran/TC4 OS Vicia faba PE 2 SV 1
blastp_uniprot_sprot sp|P41916|RAN1_ARATH 11 222 + 212 none 95.93 221 89.15 2e-140 GTP-binding nuclear protein Ran-1 OS Arabidopsis thaliana GN RAN1 PE 1 SV 1
blastp_uniprot_sprot sp|P54765|RAN1A_LOTJA 15 222 + 208 none 99.52 209 91.83 4e-139 GTP-binding nuclear protein Ran1A (Fragment) OS Lotus japonicus GN RAN1A PE 2 SV 1
blastp_uniprot_sprot sp|P54766|RAN1B_LOTJA 15 222 + 208 none 99.52 209 91.83 8e-139 GTP-binding nuclear protein Ran1B (Fragment) OS Lotus japonicus GN RAN1B PE 2 SV 1
blastp_uniprot_sprot sp|P41917|RAN2_ARATH 11 222 + 212 none 95.93 221 89.15 1e-131 GTP-binding nuclear protein Ran-2 OS Arabidopsis thaliana GN RAN2 PE 1 SV 3

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 16 172 157 PF00071 none Ras family IPR001806
PANTHER 15 222 208 PTHR24071 none none none
PRINTS 95 116 22 PR00627 none GTP-binding nuclear protein Ran/Tc4 family signature IPR002041
PRINTS 28 42 15 PR00627 none GTP-binding nuclear protein Ran/Tc4 family signature IPR002041
PRINTS 169 191 23 PR00627 none GTP-binding nuclear protein Ran/Tc4 family signature IPR002041
PRINTS 75 93 19 PR00627 none GTP-binding nuclear protein Ran/Tc4 family signature IPR002041
PRINTS 131 149 19 PR00627 none GTP-binding nuclear protein Ran/Tc4 family signature IPR002041
ProSiteProfiles 8 172 165 PS51418 none small GTPase Ran family profile. IPR002041
SMART 15 175 161 SM00175 none Rab subfamily of small GTPases IPR003579
Gene3D 10 216 207 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 14 200 187 SSF52540 none none IPR027417
SMART 12 175 164 SM00173 none Ras subfamily of RAS small GTPases IPR020849
SMART 17 171 155 SM00174 "Reactome:REACT_11044" Rho (Ras homology) subfamily of Ras-like small GTPases IPR003578
SMART 20 220 201 SM00176 none Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases IPR002041
TIGRFAM 14 165 152 TIGR00231 none small_GTP: small GTP-binding protein domain IPR005225

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting