Protein : Qrob_P0369720.2 Q. robur
Protein Identifier  ? Qrob_P0369720.2 Organism . Name  Quercus robur
Score  89.2 Score Type  egn
Protein Description  (M=2) K07936 - GTP-binding nuclear protein Ran Code Enzyme  EC:3.6.5.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 294  
Kegg Orthology  K07936
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0 Synonyms

9 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0007165 signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0007264 small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO:0003924 GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO:0006913 nucleocytoplasmic transport The directed movement of molecules between the nucleus and the cytoplasm.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|ath:AT5G55190 74 293 + 220 none 99.55 221 98.64 4e-162 RAN3 GTP-binding nuclear protein Ran-3
blastp_kegg lcl|crb:CARUB_v10027091mg 74 293 + 220 none 99.55 221 98.18 6e-162 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_918663 74 293 + 220 none 99.55 221 98.18 9e-162 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_009G095600g 74 293 + 220 none 99.55 221 98.18 4e-161 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_009G095400g 74 293 + 220 none 99.55 221 98.18 4e-161 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa008371mg 74 293 + 220 none 65.67 335 97.73 7e-161 hypothetical protein
blastp_kegg lcl|brp:103851894 74 293 + 220 none 99.55 221 97.27 8e-161 GTP-binding nuclear protein Ran-3
blastp_kegg lcl|eus:EUTSA_v10014614mg 74 293 + 220 none 99.55 221 97.27 8e-161 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_009G095500g 74 293 + 220 none 99.55 221 97.73 8e-161 hypothetical protein
blastp_kegg lcl|tcc:TCM_037999 74 293 + 220 none 99.55 221 97.73 8e-161 RAN GTPase 3
blastp_pdb 1byu_B 86 290 + 205 none 94.91 216 78.05 5e-118 mol:protein length:216 PROTEIN (GTP-BINDING PROTEIN RAN)
blastp_pdb 1byu_A 86 290 + 205 none 94.91 216 78.05 5e-118 mol:protein length:216 PROTEIN (GTP-BINDING PROTEIN RAN)
blastp_pdb 3m1i_A 82 289 + 208 none 94.98 219 78.85 1e-117 mol:protein length:219 GTP-binding nuclear protein GSP1/CNR1
blastp_pdb 3ch5_A 86 290 + 205 none 94.91 216 77.56 8e-117 mol:protein length:216 GTP-binding nuclear protein Ran
blastp_pdb 3a6p_H 86 290 + 205 none 94.91 216 77.56 8e-117 mol:protein length:216 GTP-binding nuclear protein Ran
blastp_pdb 3a6p_C 86 290 + 205 none 94.91 216 77.56 8e-117 mol:protein length:216 GTP-binding nuclear protein Ran
blastp_pdb 1qbk_C 86 290 + 205 none 94.91 216 77.56 8e-117 mol:protein length:216 RAN
blastp_pdb 1k5g_J 86 290 + 205 none 94.91 216 77.56 8e-117 mol:protein length:216 GTP-binding nuclear protein RAN
blastp_pdb 1k5g_G 86 290 + 205 none 94.91 216 77.56 8e-117 mol:protein length:216 GTP-binding nuclear protein RAN
blastp_pdb 1k5g_D 86 290 + 205 none 94.91 216 77.56 8e-117 mol:protein length:216 GTP-binding nuclear protein RAN
blastp_uniprot_sprot sp|Q8H156|RAN3_ARATH 74 293 + 220 none 99.55 221 98.64 2e-163 GTP-binding nuclear protein Ran-3 OS Arabidopsis thaliana GN RAN3 PE 1 SV 2
blastp_uniprot_sprot sp|P41918|RANA1_TOBAC 74 293 + 220 none 99.55 221 96.36 1e-159 GTP-binding nuclear protein Ran-A1 OS Nicotiana tabacum GN RAN-A1 PE 2 SV 1
blastp_uniprot_sprot sp|P38548|RAN_VICFA 74 293 + 220 none 99.55 221 95.45 4e-159 GTP-binding nuclear protein Ran/TC4 OS Vicia faba PE 2 SV 1
blastp_uniprot_sprot sp|P38546|RAN1_SOLLC 74 293 + 220 none 99.55 221 95.91 5e-159 GTP-binding nuclear protein Ran1 OS Solanum lycopersicum GN RAN1 PE 2 SV 1
blastp_uniprot_sprot sp|P41919|RANB1_TOBAC 74 293 + 220 none 99.55 221 95.91 1e-158 GTP-binding nuclear protein Ran-B1 OS Nicotiana tabacum GN RAN-B1 PE 2 SV 1
blastp_uniprot_sprot sp|P38547|RAN2_SOLLC 74 293 + 220 none 99.55 221 95.45 5e-158 GTP-binding nuclear protein Ran2 OS Solanum lycopersicum GN RAN2 PE 2 SV 1
blastp_uniprot_sprot sp|P41916|RAN1_ARATH 74 293 + 220 none 99.55 221 95.00 1e-157 GTP-binding nuclear protein Ran-1 OS Arabidopsis thaliana GN RAN1 PE 1 SV 1
blastp_uniprot_sprot sp|P54765|RAN1A_LOTJA 85 293 + 209 none 100.00 209 97.61 5e-153 GTP-binding nuclear protein Ran1A (Fragment) OS Lotus japonicus GN RAN1A PE 2 SV 1
blastp_uniprot_sprot sp|P54766|RAN1B_LOTJA 85 293 + 209 none 100.00 209 97.13 2e-152 GTP-binding nuclear protein Ran1B (Fragment) OS Lotus japonicus GN RAN1B PE 2 SV 1
blastp_uniprot_sprot sp|P41917|RAN2_ARATH 74 293 + 220 none 99.55 221 95.00 6e-149 GTP-binding nuclear protein Ran-2 OS Arabidopsis thaliana GN RAN2 PE 1 SV 3

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 202 220 19 PR00627 none GTP-binding nuclear protein Ran/Tc4 family signature IPR002041
PRINTS 166 187 22 PR00627 none GTP-binding nuclear protein Ran/Tc4 family signature IPR002041
PRINTS 146 164 19 PR00627 none GTP-binding nuclear protein Ran/Tc4 family signature IPR002041
PRINTS 99 113 15 PR00627 none GTP-binding nuclear protein Ran/Tc4 family signature IPR002041
PRINTS 240 262 23 PR00627 none GTP-binding nuclear protein Ran/Tc4 family signature IPR002041
PANTHER 74 293 220 PTHR24071 none none none
Phobius 1 19 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 79 243 165 PS51418 none small GTPase Ran family profile. IPR002041
Gene3D 82 277 196 G3DSA:3.40.50.300 none none IPR027417
Pfam 87 243 157 PF00071 none Ras family IPR001806
SUPERFAMILY 86 265 180 SSF52540 none none IPR027417
Phobius 20 37 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 86 236 151 TIGR00231 none small_GTP: small GTP-binding protein domain IPR005225
SMART 86 246 161 SM00175 none Rab subfamily of small GTPases IPR003579
SMART 91 292 202 SM00176 none Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases IPR002041
Phobius 38 293 256 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SMART 83 246 164 SM00173 none Ras subfamily of RAS small GTPases IPR020849
SMART 88 242 155 SM00174 "Reactome:REACT_11044" Rho (Ras homology) subfamily of Ras-like small GTPases IPR003578

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting