Protein : Qrob_P0369670.2 Q. robur
Protein Identifier  ? Qrob_P0369670.2 Organism . Name  Quercus robur
Score  89.3 Score Type  egn
Protein Description  (M=1) PF00520//PF11834 - Ion transport protein // Domain of unknown function (DUF3354) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 604  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0006813 potassium ion transport The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0005249 voltage-gated potassium channel activity Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100266175 34 598 + 565 Gaps:70 57.34 872 74.00 0.0 potassium channel AKT1-like
blastp_kegg lcl|fve:101311506 15 597 + 583 Gaps:86 54.20 893 76.24 0.0 potassium channel AKT1-like
blastp_kegg lcl|cmo:103502725 43 598 + 556 Gaps:70 56.01 873 74.85 0.0 potassium channel AKT1
blastp_kegg lcl|csv:101220784 43 598 + 556 Gaps:72 55.67 873 75.10 0.0 potassium channel AKT1-like
blastp_kegg lcl|cic:CICLE_v10007412mg 43 600 + 558 Gaps:71 53.22 885 77.71 0.0 hypothetical protein
blastp_kegg lcl|cit:102611571 43 600 + 558 Gaps:71 53.34 883 77.49 0.0 potassium channel AKT1-like
blastp_kegg lcl|rcu:RCOM_0826630 43 598 + 556 Gaps:71 52.16 901 75.74 0.0 Potassium channel AKT1 putative
blastp_kegg lcl|pper:PRUPE_ppa019987mg 45 601 + 557 Gaps:68 55.38 874 76.45 0.0 hypothetical protein
blastp_kegg lcl|pmum:103320058 45 601 + 557 Gaps:68 57.14 847 75.83 0.0 potassium channel AKT1-like
blastp_kegg lcl|sot:102581965 12 598 + 587 Gaps:82 57.76 883 70.59 0.0 potassium channel AKT1-like
blastp_uniprot_sprot sp|Q38998|AKT1_ARATH 29 598 + 570 Gaps:76 57.76 857 68.28 0.0 Potassium channel AKT1 OS Arabidopsis thaliana GN AKT1 PE 1 SV 2
blastp_uniprot_sprot sp|Q0JKV1|AKT1_ORYSJ 43 599 + 557 Gaps:82 53.16 935 70.62 0.0 Potassium channel AKT1 OS Oryza sativa subsp. japonica GN AKT1 PE 2 SV 1
blastp_uniprot_sprot sp|P0C550|AKT1_ORYSI 43 599 + 557 Gaps:82 53.16 935 70.82 0.0 Potassium channel AKT1 OS Oryza sativa subsp. indica GN AKT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXE6|AKT6_ARATH 40 598 + 559 Gaps:68 55.74 888 65.86 0.0 Potassium channel AKT6 OS Arabidopsis thaliana GN AKT6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SCX5|AKT5_ARATH 30 596 + 567 Gaps:80 61.02 880 61.27 0.0 Probable potassium channel AKT5 OS Arabidopsis thaliana GN AKT5 PE 2 SV 2
blastp_uniprot_sprot sp|Q8H569|AKT3_ORYSJ 47 598 + 552 Gaps:72 52.15 907 63.00 1e-170 Potassium channel AKT3 OS Oryza sativa subsp. japonica GN Os07g0175400 PE 3 SV 1
blastp_uniprot_sprot sp|Q39128|KAT1_ARATH 49 513 + 465 Gaps:74 58.35 677 62.78 1e-158 Potassium channel KAT1 OS Arabidopsis thaliana GN KAT1 PE 1 SV 2
blastp_uniprot_sprot sp|Q38849|KAT2_ARATH 49 600 + 552 Gaps:98 72.74 697 57.20 9e-151 Potassium channel KAT2 OS Arabidopsis thaliana GN KAT2 PE 1 SV 3
blastp_uniprot_sprot sp|Q5JM04|KAT3_ORYSJ 53 513 + 461 Gaps:74 77.89 502 59.08 1e-148 Potassium channel KAT3 OS Oryza sativa subsp. japonica GN Os01g0756700 PE 2 SV 1
blastp_uniprot_sprot sp|Q6K3T2|KAT1_ORYSJ 41 596 + 556 Gaps:95 75.77 718 50.18 3e-143 Potassium channel KAT1 OS Oryza sativa subsp. japonica GN Os02g0245800 PE 2 SV 1
rpsblast_cdd gnl|CDD|178734 48 598 + 551 Gaps:74 55.04 823 54.30 1e-138 PLN03192 PLN03192 Voltage-dependent potassium channel Provisional.
rpsblast_cdd gnl|CDD|204757 531 596 + 66 Gaps:3 100.00 69 62.32 3e-26 pfam11834 DUF3354 Domain of unknown function (DUF3354). This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is about 60 amino acids in length.
rpsblast_cdd gnl|CDD|201279 144 344 + 201 Gaps:27 100.00 194 22.16 5e-20 pfam00520 Ion_trans Ion transport protein. This family contains Sodium Potassium Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices.
rpsblast_kog gnl|CDD|35719 45 519 + 475 Gaps:100 60.39 727 39.41 1e-109 KOG0498 KOG0498 KOG0498 K+-channel ERG and related proteins contain PAS/PAC sensor domain [Inorganic ion transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|35722 111 358 + 248 Gaps:26 27.60 971 23.51 1e-21 KOG0501 KOG0501 KOG0501 K+-channel KCNQ [Inorganic ion transport and metabolism].
rpsblast_kog gnl|CDD|35721 116 510 + 395 Gaps:62 66.23 536 23.38 1e-15 KOG0500 KOG0500 KOG0500 Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|35720 111 513 + 403 Gaps:94 43.80 815 21.01 2e-12 KOG0499 KOG0499 KOG0499 Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism Signal transduction mechanisms].

33 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 40 81 42 PTHR10217 none none none
Phobius 270 326 57 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 327 349 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 110 348 239 SSF81324 none none none
Pfam 144 344 201 PF00520 none Ion transport protein IPR005821
Phobius 1 80 80 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 467 551 85 PS50042 none cAMP/cGMP binding motif profile. IPR000595
Phobius 114 135 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 136 146 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 223 242 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 533 603 71 PS51490 none KHA domain profile. IPR021789
Phobius 243 269 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 401 510 110 PTHR10217 none none none
PANTHER 110 361 252 PTHR10217 none none none
SUPERFAMILY 400 510 111 SSF51206 none none IPR018490
Gene3D 455 510 56 G3DSA:2.60.120.10 none none IPR014710
Gene3D 110 348 239 G3DSA:1.10.287.70 none none none
Phobius 167 204 38 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 401 510 110 PTHR10217:SF477 none none none
PANTHER 40 81 42 PTHR10217:SF477 none none none
Phobius 103 113 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 205 222 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 350 603 254 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 147 166 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 532 596 65 PF11834 none Domain of unknown function (DUF3354) IPR021789
PANTHER 110 361 252 PTHR10217:SF477 none none none
Phobius 81 102 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PRINTS 157 166 10 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938
PRINTS 296 313 18 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938
PRINTS 340 349 10 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938

4 Localization

Analysis Start End Length
TMHMM 327 349 22
TMHMM 111 133 22
TMHMM 148 166 18
TMHMM 248 270 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting