Protein : Qrob_P0369360.2 Q. robur
Protein Identifier  ? Qrob_P0369360.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) PTHR11207:SF1 - RIBONUCLEASE III Gene Prediction Quality  validated
Protein length 

Sequence

Length: 263  
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003725 double-stranded RNA binding Interacting selectively and non-covalently with double-stranded RNA.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100257098 1 193 + 193 Gaps:3 57.06 333 72.63 2e-87 double-stranded RNA-binding protein 4-like
blastp_kegg lcl|cit:102607749 1 188 + 188 Gaps:3 44.05 420 69.19 1e-79 double-stranded RNA-binding protein 4-like
blastp_kegg lcl|cic:CICLE_v10011836mg 1 188 + 188 Gaps:3 44.26 418 69.19 1e-79 hypothetical protein
blastp_kegg lcl|pop:POPTR_0005s14370g 1 214 + 214 Gaps:10 43.83 470 63.11 3e-76 hypothetical protein
blastp_kegg lcl|tcc:TCM_019209 1 194 + 194 Gaps:3 61.41 311 64.40 5e-66 DsRNA-binding domain-like superfamily protein putative
blastp_kegg lcl|sot:102594805 1 193 + 193 Gaps:4 53.24 355 58.20 1e-63 double-stranded RNA-binding protein 4-like
blastp_kegg lcl|rcu:RCOM_0285330 1 195 + 195 Gaps:2 66.78 289 58.55 1e-62 double-stranded RNA binding protein putative
blastp_kegg lcl|sly:101257125 1 193 + 193 Gaps:4 46.90 403 56.61 4e-62 uncharacterized LOC101257125
blastp_kegg lcl|pda:103699073 1 183 + 183 Gaps:4 42.79 423 60.22 3e-60 uncharacterized LOC103699073
blastp_kegg lcl|pda:103722271 1 183 + 183 Gaps:4 49.05 369 59.67 7e-60 double-stranded RNA-binding protein 1-like
blastp_pdb 2l2n_A 1 82 + 82 none 79.61 103 39.02 3e-12 mol:protein length:103 Hyponastic leave 1
blastp_pdb 3adi_C 1 70 + 70 none 95.89 73 42.86 1e-11 mol:protein length:73 F21M12.9 protein
blastp_pdb 3adi_B 1 70 + 70 none 95.89 73 42.86 1e-11 mol:protein length:73 F21M12.9 protein
blastp_pdb 3adi_A 1 70 + 70 none 95.89 73 42.86 1e-11 mol:protein length:73 F21M12.9 protein
blastp_pdb 3adg_A 1 70 + 70 none 95.89 73 42.86 1e-11 mol:protein length:73 F21M12.9 protein
blastp_uniprot_sprot sp|Q6YW64|DRB4_ORYSJ 2 178 + 177 Gaps:8 56.73 312 38.98 5e-27 Double-stranded RNA-binding protein 4 OS Oryza sativa subsp. japonica GN DRB4 PE 2 SV 1
blastp_uniprot_sprot sp|Q0IQN6|DRB8_ORYSJ 1 158 + 158 Gaps:5 36.56 424 38.71 3e-22 Double-stranded RNA-binding protein 8 OS Oryza sativa subsp. japonica GN DRB8 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DJA3|DRB3_ORYSJ 1 158 + 158 Gaps:5 35.47 437 38.71 6e-22 Double-stranded RNA-binding protein 3 OS Oryza sativa subsp. japonica GN DRB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q0IV63|DRB7_ORYSJ 1 158 + 158 Gaps:3 32.77 473 39.35 7e-22 Double-stranded RNA-binding protein 7 OS Oryza sativa subsp. japonica GN DRB7 PE 2 SV 1
blastp_uniprot_sprot sp|O04492|DRB1_ARATH 1 153 + 153 Gaps:4 36.52 419 36.60 2e-21 Double-stranded RNA-binding protein 1 OS Arabidopsis thaliana GN DRB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5N8Z0|DRB1_ORYSJ 2 155 + 154 Gaps:9 33.79 441 40.27 5e-21 Double-stranded RNA-binding protein 1 OS Oryza sativa subsp. japonica GN DRB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DKP4|DRB2_ORYSJ 1 150 + 150 Gaps:3 25.13 593 34.90 2e-20 Double-stranded RNA-binding protein 2 OS Oryza sativa subsp. japonica GN DRB2 PE 2 SV 1
blastp_uniprot_sprot sp|B7E321|DRB5_ORYSJ 1 153 + 153 Gaps:7 37.62 404 34.87 3e-20 Double-stranded RNA-binding protein 5 OS Oryza sativa subsp. japonica GN DRB5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LJF5|DRB3_ARATH 1 153 + 153 Gaps:5 42.34 359 35.53 5e-20 Double-stranded RNA-binding protein 3 OS Arabidopsis thaliana GN DRB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SKN2|DRB2_ARATH 1 160 + 160 Gaps:5 37.10 434 34.78 6e-20 Double-stranded RNA-binding protein 2 OS Arabidopsis thaliana GN DRB2 PE 1 SV 1
rpsblast_cdd gnl|CDD|178863 2 71 + 70 Gaps:2 30.57 229 37.14 4e-11 PRK00102 rnc ribonuclease III Reviewed.
rpsblast_cdd gnl|CDD|200945 2 68 + 67 Gaps:1 100.00 66 36.36 1e-08 pfam00035 dsrm Double-stranded RNA binding motif. Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans which is part of the cellular response to dsRNA.
rpsblast_cdd gnl|CDD|30916 2 71 + 70 Gaps:2 29.79 235 34.29 7e-08 COG0571 Rnc dsRNA-specific ribonuclease [Transcription].
rpsblast_cdd gnl|CDD|28930 2 68 + 67 Gaps:2 98.53 68 38.81 9e-08 cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR RNA helicases Drosophila staufen protein E. coli RNase III RNases H1 and dsRNA dependent adenosine deaminases..
rpsblast_cdd gnl|CDD|197679 2 66 + 65 Gaps:3 95.52 67 39.06 4e-07 smart00358 DSRM Double-stranded RNA binding motif.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 90 154 65 SSF54768 none none none
PANTHER 1 158 158 PTHR11207:SF1 none none IPR031147
Pfam 91 150 60 PF00035 none Double-stranded RNA binding motif IPR014720
Pfam 2 67 66 PF00035 none Double-stranded RNA binding motif IPR014720
SUPERFAMILY 2 68 67 SSF54768 none none none
ProSiteProfiles 1 70 70 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
PANTHER 1 158 158 PTHR11207 none none none
Gene3D 91 151 61 G3DSA:3.30.160.20 none none IPR014720
Gene3D 2 68 67 G3DSA:3.30.160.20 none none IPR014720
SMART 90 155 66 SM00358 none Double-stranded RNA binding motif IPR014720
SMART 2 69 68 SM00358 none Double-stranded RNA binding motif IPR014720

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting