Protein : Qrob_P0365410.2 Q. robur
Protein Identifier  ? Qrob_P0365410.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=15) PTHR11588 - TUBULIN Gene Prediction Quality  validated
Protein length 

Sequence

Length: 252  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0007017 microtubule-based process Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.
GO:0003924 GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO:0005874 microtubule Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sot:102577913 1 203 + 203 Gaps:28 97.47 237 40.69 3e-26 alpha-tubulin-like protein
blastp_kegg lcl|nvi:100117239 1 41 + 41 Gaps:1 21.43 196 80.95 4e-15 tubulin alpha-1C chain-like
blastp_kegg lcl|asn:102370581 1 56 + 56 Gaps:2 12.23 458 71.43 7e-15 tubulin alpha-1A chain-like
blastp_kegg lcl|mze:101473786 1 37 + 37 Gaps:1 88.37 43 76.32 1e-14 tubulin alpha-1D chain-like
blastp_kegg lcl|fab:101814119 1 36 + 36 Gaps:1 66.07 56 78.38 2e-14 tubulin alpha-2 chain-like
blastp_kegg lcl|ppp:PHYPADRAFT_29741 1 38 + 38 Gaps:1 30.71 127 87.18 4e-14 hypothetical protein
blastp_kegg lcl|mtr:MTR_4g097830 1 38 + 38 Gaps:1 8.65 451 89.74 5e-14 Tubulin alpha-5 chain
blastp_kegg lcl|pvu:PHAVU_002G007900g 1 38 + 38 Gaps:1 8.65 451 89.74 5e-14 hypothetical protein
blastp_kegg lcl|fpg:101924094 1 56 + 56 none 12.23 458 62.50 5e-14 TUBA1C tubulin alpha 1c
blastp_kegg lcl|dosa:Os03t0726100-01 1 38 + 38 Gaps:1 8.65 451 89.74 6e-14 Os03g0726100 Similar to Tubulin alpha-1 chain (Alpha-1 tubulin).
blastp_pdb 3e22_C 1 38 + 38 Gaps:1 8.69 449 79.49 2e-14 mol:protein length:449 Tubulin alpha-1C chain
blastp_pdb 3e22_A 1 38 + 38 Gaps:1 8.69 449 79.49 2e-14 mol:protein length:449 Tubulin alpha-1C chain
blastp_pdb 3du7_C 1 38 + 38 Gaps:1 8.69 449 79.49 2e-14 mol:protein length:449 Tubulin alpha-1C chain
blastp_pdb 3du7_A 1 38 + 38 Gaps:1 8.69 449 79.49 2e-14 mol:protein length:449 Tubulin alpha-1C chain
blastp_pdb 1tvk_A 1 38 + 38 Gaps:1 8.86 440 79.49 2e-14 mol:protein length:440 Tubulin alpha chain
blastp_pdb 1tub_A 1 38 + 38 Gaps:1 8.86 440 79.49 2e-14 mol:protein length:440 TUBULIN
blastp_pdb 3ryi_C 1 38 + 38 Gaps:1 8.65 451 79.49 2e-14 mol:protein length:451 Tubulin alpha chain
blastp_pdb 3ryi_A 1 38 + 38 Gaps:1 8.65 451 79.49 2e-14 mol:protein length:451 Tubulin alpha chain
blastp_pdb 3ryh_C 1 38 + 38 Gaps:1 8.65 451 79.49 2e-14 mol:protein length:451 Tubulin alpha chain
blastp_pdb 3ryh_A 1 38 + 38 Gaps:1 8.65 451 79.49 2e-14 mol:protein length:451 Tubulin alpha chain
blastp_uniprot_sprot sp|P33626|TBA4_MAIZE 1 36 + 36 Gaps:1 60.66 61 91.89 1e-17 Tubulin alpha-4 chain (Fragments) OS Zea mays GN TUBA4 PE 3 SV 1
blastp_uniprot_sprot sp|P14641|TBA2_MAIZE 1 38 + 38 Gaps:1 8.65 451 87.18 6e-15 Tubulin alpha-2 chain OS Zea mays GN TUBA2 PE 3 SV 1
blastp_uniprot_sprot sp|P14640|TBA1_MAIZE 1 38 + 38 Gaps:1 8.65 451 87.18 6e-15 Tubulin alpha-1 chain OS Zea mays GN TUBA1 PE 3 SV 1
blastp_uniprot_sprot sp|O22347|TBA1_ELEIN 1 38 + 38 Gaps:1 8.65 451 87.18 6e-15 Tubulin alpha-1 chain OS Eleusine indica GN TUBA1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6VAG1|TBA1_GOSHI 1 38 + 38 Gaps:1 8.65 451 87.18 1e-14 Tubulin alpha-1 chain OS Gossypium hirsutum PE 2 SV 1
blastp_uniprot_sprot sp|Q6VAG0|TBA2_GOSHI 1 38 + 38 Gaps:1 8.67 450 87.18 1e-14 Tubulin alpha-2 chain OS Gossypium hirsutum PE 2 SV 1
blastp_uniprot_sprot sp|Q0WV25|TBA4_ARATH 1 38 + 38 Gaps:1 8.67 450 87.18 1e-14 Tubulin alpha-4 chain OS Arabidopsis thaliana GN TUBA4 PE 2 SV 2
blastp_uniprot_sprot sp|B9DGT7|TBA2_ARATH 1 38 + 38 Gaps:1 8.67 450 87.18 1e-14 Tubulin alpha-2 chain OS Arabidopsis thaliana GN TUBA2 PE 2 SV 2
blastp_uniprot_sprot sp|Q6VAF9|TBA4_GOSHI 1 38 + 38 Gaps:1 8.67 450 87.18 1e-14 Tubulin alpha-4 chain OS Gossypium hirsutum PE 2 SV 1
blastp_uniprot_sprot sp|Q38771|TBA_AVESA 1 38 + 38 Gaps:1 8.72 447 87.18 3e-14 Tubulin alpha chain OS Avena sativa GN TUBA PE 2 SV 1

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 3 36 34 PF00091 none Tubulin/FtsZ family, GTPase domain IPR003008
SUPERFAMILY 1 36 36 SSF52490 none none IPR003008
Gene3D 1 34 34 G3DSA:3.40.50.1440 none none IPR003008
PANTHER 1 37 37 PTHR11588 none none IPR000217

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting