7 GO Terms
Identifier | Name | Description |
---|---|---|
GO:0005515 | protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
GO:0016020 | membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
GO:0055085 | transmembrane transport | The process in which a solute is transported from one side of a membrane to the other. |
GO:0006813 | potassium ion transport | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
GO:0005216 | ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). |
GO:0006811 | ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
GO:0005249 | voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. |
50 Blast
Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
---|---|---|---|---|---|---|---|---|---|---|---|
blastp_kegg | lcl|cic:CICLE_v10007412mg | 13 | 858 | + | 846 | Gaps:20 | 97.40 | 885 | 81.55 | 0.0 | hypothetical protein |
blastp_kegg | lcl|cmo:103502725 | 1 | 858 | + | 858 | Gaps:22 | 99.43 | 873 | 81.34 | 0.0 | potassium channel AKT1 |
blastp_kegg | lcl|cit:102611571 | 13 | 858 | + | 846 | Gaps:18 | 97.40 | 883 | 81.51 | 0.0 | potassium channel AKT1-like |
blastp_kegg | lcl|rcu:RCOM_0826630 | 1 | 858 | + | 858 | Gaps:18 | 97.00 | 901 | 79.75 | 0.0 | Potassium channel AKT1 putative |
blastp_kegg | lcl|tcc:TCM_037994 | 1 | 875 | + | 875 | Gaps:23 | 99.89 | 885 | 79.41 | 0.0 | K+ transporter 1 |
blastp_kegg | lcl|vvi:100266175 | 4 | 858 | + | 855 | Gaps:19 | 99.77 | 872 | 80.23 | 0.0 | potassium channel AKT1-like |
blastp_kegg | lcl|csv:101220784 | 1 | 858 | + | 858 | Gaps:22 | 99.43 | 873 | 80.76 | 0.0 | potassium channel AKT1-like |
blastp_kegg | lcl|fve:101311506 | 13 | 866 | + | 854 | Gaps:24 | 97.87 | 893 | 78.95 | 0.0 | potassium channel AKT1-like |
blastp_kegg | lcl|pop:POPTR_0006s15950g | 1 | 858 | + | 858 | Gaps:29 | 98.70 | 848 | 81.12 | 0.0 | POPTRDRAFT_561123 k transporter family protein |
blastp_kegg | lcl|mdm:103415754 | 13 | 863 | + | 851 | Gaps:23 | 98.40 | 874 | 80.35 | 0.0 | potassium channel AKT1-like |
blastp_pdb | 2xeh_C | 516 | 701 | + | 186 | Gaps:5 | 94.27 | 157 | 47.30 | 2e-19 | mol:protein length:157 NI3C MUT6 |
blastp_pdb | 2xeh_B | 516 | 701 | + | 186 | Gaps:5 | 94.27 | 157 | 47.30 | 2e-19 | mol:protein length:157 NI3C MUT6 |
blastp_pdb | 2xeh_A | 516 | 701 | + | 186 | Gaps:5 | 94.27 | 157 | 47.30 | 2e-19 | mol:protein length:157 NI3C MUT6 |
blastp_pdb | 1n11_A | 505 | 745 | + | 241 | Gaps:115 | 92.91 | 437 | 43.84 | 1e-18 | mol:protein length:437 Ankyrin |
blastp_pdb | 2xee_D | 516 | 701 | + | 186 | Gaps:8 | 96.18 | 157 | 52.32 | 4e-18 | mol:protein length:157 NI3C DARPIN MUTANT5 |
blastp_pdb | 2xee_C | 516 | 701 | + | 186 | Gaps:8 | 96.18 | 157 | 52.32 | 4e-18 | mol:protein length:157 NI3C DARPIN MUTANT5 |
blastp_pdb | 2xee_B | 516 | 701 | + | 186 | Gaps:8 | 96.18 | 157 | 52.32 | 4e-18 | mol:protein length:157 NI3C DARPIN MUTANT5 |
blastp_pdb | 2xee_A | 516 | 701 | + | 186 | Gaps:8 | 96.18 | 157 | 52.32 | 4e-18 | mol:protein length:157 NI3C DARPIN MUTANT5 |
blastp_pdb | 1n0r_A | 516 | 700 | + | 185 | Gaps:67 | 99.21 | 126 | 64.00 | 7e-18 | mol:protein length:126 4 ankyrin repeats |
blastp_pdb | 3q9u_D | 514 | 699 | + | 186 | Gaps:32 | 97.47 | 158 | 37.01 | 6e-17 | mol:protein length:158 consensus ankyrin repeat |
blastp_uniprot_sprot | sp|Q38998|AKT1_ARATH | 14 | 858 | + | 845 | Gaps:32 | 99.07 | 857 | 71.97 | 0.0 | Potassium channel AKT1 OS Arabidopsis thaliana GN AKT1 PE 1 SV 2 |
blastp_uniprot_sprot | sp|Q0JKV1|AKT1_ORYSJ | 22 | 858 | + | 837 | Gaps:38 | 92.30 | 935 | 65.70 | 0.0 | Potassium channel AKT1 OS Oryza sativa subsp. japonica GN AKT1 PE 2 SV 1 |
blastp_uniprot_sprot | sp|P0C550|AKT1_ORYSI | 22 | 858 | + | 837 | Gaps:38 | 92.30 | 935 | 65.70 | 0.0 | Potassium channel AKT1 OS Oryza sativa subsp. indica GN AKT1 PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q8GXE6|AKT6_ARATH | 21 | 856 | + | 836 | Gaps:32 | 95.72 | 888 | 64.35 | 0.0 | Potassium channel AKT6 OS Arabidopsis thaliana GN AKT6 PE 1 SV 2 |
blastp_uniprot_sprot | sp|Q9SCX5|AKT5_ARATH | 12 | 857 | + | 846 | Gaps:33 | 97.61 | 880 | 63.10 | 0.0 | Probable potassium channel AKT5 OS Arabidopsis thaliana GN AKT5 PE 2 SV 2 |
blastp_uniprot_sprot | sp|Q8H569|AKT3_ORYSJ | 30 | 858 | + | 829 | Gaps:54 | 94.71 | 907 | 55.88 | 0.0 | Potassium channel AKT3 OS Oryza sativa subsp. japonica GN Os07g0175400 PE 3 SV 1 |
blastp_uniprot_sprot | sp|Q75HP9|AKT2_ORYSJ | 31 | 858 | + | 828 | Gaps:108 | 94.27 | 855 | 45.91 | 0.0 | Potassium channel AKT2 OS Oryza sativa subsp. japonica GN Os05g0428700 PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q39128|KAT1_ARATH | 32 | 858 | + | 827 | Gaps:18 | 79.03 | 677 | 60.19 | 0.0 | Potassium channel KAT1 OS Arabidopsis thaliana GN KAT1 PE 1 SV 2 |
blastp_uniprot_sprot | sp|Q38849|KAT2_ARATH | 20 | 854 | + | 835 | Gaps:27 | 79.63 | 697 | 60.36 | 0.0 | Potassium channel KAT2 OS Arabidopsis thaliana GN KAT2 PE 1 SV 3 |
blastp_uniprot_sprot | sp|Q38898|AKT2_ARATH | 31 | 682 | + | 652 | Gaps:27 | 83.17 | 802 | 47.83 | 0.0 | Potassium channel AKT2/3 OS Arabidopsis thaliana GN AKT2 PE 1 SV 1 |
46 Domain Motifs
Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
---|---|---|---|---|---|---|---|
ProSiteProfiles | 380 | 471 | 92 | PS50042 | none | cAMP/cGMP binding motif profile. | IPR000595 |
Phobius | 157 | 174 | 18 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
Phobius | 245 | 267 | 23 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
Phobius | 195 | 220 | 26 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
SUPERFAMILY | 519 | 699 | 181 | SSF48403 | none | none | IPR020683 |
ProSiteProfiles | 580 | 612 | 33 | PS50088 | none | Ankyrin repeat profile. | IPR002110 |
Gene3D | 374 | 491 | 118 | G3DSA:2.60.120.10 | none | none | IPR014710 |
Phobius | 221 | 244 | 24 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
Gene3D | 63 | 307 | 245 | G3DSA:1.10.287.70 | none | none | none |
SUPERFAMILY | 305 | 489 | 185 | SSF51206 | none | none | IPR018490 |
Phobius | 1 | 66 | 66 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
Phobius | 67 | 87 | 21 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
PANTHER | 21 | 598 | 578 | PTHR10217:SF477 | none | none | none |
Phobius | 175 | 194 | 20 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
Phobius | 99 | 118 | 20 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
Phobius | 268 | 278 | 11 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
PRINTS | 98 | 108 | 11 | PR01463 | none | EAG/ELK/ERG potassium channel family signature | IPR003938 |
PRINTS | 274 | 285 | 12 | PR01463 | none | EAG/ELK/ERG potassium channel family signature | IPR003938 |
PRINTS | 109 | 118 | 10 | PR01463 | none | EAG/ELK/ERG potassium channel family signature | IPR003938 |
PRINTS | 292 | 301 | 10 | PR01463 | none | EAG/ELK/ERG potassium channel family signature | IPR003938 |
PRINTS | 75 | 82 | 8 | PR01463 | none | EAG/ELK/ERG potassium channel family signature | IPR003938 |
PRINTS | 248 | 265 | 18 | PR01463 | none | EAG/ELK/ERG potassium channel family signature | IPR003938 |
Phobius | 279 | 301 | 23 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
Pfam | 618 | 694 | 77 | PF12796 | none | Ankyrin repeats (3 copies) | IPR020683 |
Pfam | 519 | 608 | 90 | PF12796 | none | Ankyrin repeats (3 copies) | IPR020683 |
Pfam | 400 | 474 | 75 | PF00027 | none | Cyclic nucleotide-binding domain | IPR000595 |
Pfam | 96 | 296 | 201 | PF00520 | none | Ion transport protein | IPR005821 |
SMART | 380 | 486 | 107 | SM00100 | none | Cyclic nucleotide-monophosphate binding domain | IPR000595 |
SMART | 580 | 609 | 30 | SM00248 | none | ankyrin repeats | IPR002110 |
SMART | 645 | 674 | 30 | SM00248 | none | ankyrin repeats | IPR002110 |
5 Localization
Analysis | Start | End | Length |
---|---|---|---|
TMHMM | 62 | 84 | 22 |
TMHMM | 244 | 266 | 22 |
TMHMM | 279 | 301 | 22 |
TMHMM | 104 | 126 | 22 |
TMHMM | 202 | 224 | 22 |
1 Qtllist
Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
---|---|---|---|---|---|---|---|---|---|---|
Bourran1_2003_QTL2_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 87 | lod | 3,3 | 8,7 |