Protein : Qrob_P0361560.2 Q. robur
Protein Identifier  ? Qrob_P0361560.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K13345 - peroxin-12 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 365  
Kegg Orthology  K13345
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0005779 integral component of peroxisomal membrane The component of the peroxisomal membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006625 protein targeting to peroxisome The process of directing proteins towards the peroxisome, usually using signals contained within the protein.
GO:0008022 protein C-terminus binding Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10024089mg 1 344 + 344 Gaps:26 100.00 370 78.65 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0013s04500g 1 351 + 351 Gaps:27 96.18 393 78.31 0.0 POPTRDRAFT_571109 peroxisome assembly protein 12
blastp_kegg lcl|cit:102623127 1 346 + 346 Gaps:26 94.66 393 77.96 0.0 peroxisome biogenesis protein 12-like
blastp_kegg lcl|cmo:103485872 1 346 + 346 Gaps:26 94.66 393 76.34 0.0 peroxisome biogenesis protein 12
blastp_kegg lcl|csv:101206004 1 346 + 346 Gaps:26 94.66 393 76.08 0.0 peroxisome biogenesis protein 12-like
blastp_kegg lcl|pop:POPTR_0019s03680g 1 344 + 344 Gaps:31 94.07 388 78.90 0.0 POPTRDRAFT_809478 peroxisome assembly protein 12
blastp_kegg lcl|rcu:RCOM_0609720 1 351 + 351 Gaps:27 96.18 393 75.93 0.0 hypothetical protein
blastp_kegg lcl|pmum:103318707 1 346 + 346 Gaps:26 94.66 393 79.30 0.0 peroxisome biogenesis protein 12
blastp_kegg lcl|pper:PRUPE_ppa006828mg 1 346 + 346 Gaps:26 94.66 393 78.76 0.0 hypothetical protein
blastp_kegg lcl|vvi:100257920 1 353 + 353 Gaps:27 96.69 393 76.05 0.0 peroxisome biogenesis protein 12-like
blastp_uniprot_sprot sp|Q9M841|PEX12_ARATH 1 346 + 346 Gaps:30 94.66 393 70.70 0.0 Peroxisome biogenesis protein 12 OS Arabidopsis thaliana GN PEX12 PE 1 SV 2
blastp_uniprot_sprot sp|A4FUD4|PEX12_BOVIN 11 342 + 332 Gaps:67 88.30 359 35.33 1e-34 Peroxisome assembly protein 12 OS Bos taurus GN PEX12 PE 2 SV 1
blastp_uniprot_sprot sp|O00623|PEX12_HUMAN 11 342 + 332 Gaps:67 88.30 359 34.70 2e-33 Peroxisome assembly protein 12 OS Homo sapiens GN PEX12 PE 1 SV 1
blastp_uniprot_sprot sp|Q8VC48|PEX12_MOUSE 11 342 + 332 Gaps:77 88.30 359 34.70 8e-31 Peroxisome assembly protein 12 OS Mus musculus GN Pex12 PE 2 SV 1
blastp_uniprot_sprot sp|O88177|PEX12_RAT 11 342 + 332 Gaps:67 88.30 359 34.70 8e-30 Peroxisome assembly protein 12 OS Rattus norvegicus GN Pex12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ET67|PEX12_CRILO 11 342 + 332 Gaps:67 88.30 359 34.70 1e-29 Peroxisome assembly protein 12 OS Cricetulus longicaudatus GN PEX12 PE 2 SV 1
blastp_uniprot_sprot sp|Q19189|PEX12_CAEEL 8 343 + 336 Gaps:73 88.86 359 27.59 4e-26 Putative peroxisome assembly protein 12 OS Caenorhabditis elegans GN prx-12 PE 3 SV 1
blastp_uniprot_sprot sp|Q54N40|PEX12_DICDI 3 344 + 342 Gaps:35 62.53 459 39.02 1e-23 Putative peroxisome assembly protein 12 OS Dictyostelium discoideum GN pex12 PE 3 SV 1
blastp_uniprot_sprot sp|C8VCP8|PEX12_EMENI 11 343 + 333 Gaps:96 81.60 489 25.56 2e-20 Peroxisome assembly protein 12 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN PEX12 PE 3 SV 1
blastp_uniprot_sprot sp|Q01961|PEX12_PICPA 263 343 + 81 Gaps:19 22.49 409 34.78 2e-08 Peroxisome assembly protein 12 OS Komagataella pastoris GN PEX12 PE 3 SV 1
rpsblast_cdd gnl|CDD|203083 20 275 + 256 Gaps:60 99.53 215 32.71 1e-32 pfam04757 Pex2_Pex12 Pex2 / Pex12 amino terminal region. This region is found at the N terminal of a number of known and predicted peroxins including Pex2 Pex10 and Pex12. This conserved region is usually associated with a C terminal ring finger (pfam00097) domain.
rpsblast_kog gnl|CDD|36044 1 343 + 343 Gaps:15 92.44 357 35.76 1e-95 KOG0826 KOG0826 KOG0826 Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification protein turnover chaperones].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 344 344 PTHR12888:SF0 none none none
PANTHER 1 344 344 PTHR12888 none none IPR017375
PIRSF 1 347 347 PIRSF038074 none none IPR017375
Pfam 20 277 258 PF04757 none Pex2 / Pex12 amino terminal region IPR006845
SUPERFAMILY 305 345 41 SSF57850 none none none
Gene3D 311 345 35 G3DSA:3.30.40.10 none none IPR013083

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting