Protein : Qrob_P0359100.2 Q. robur
Protein Identifier  ? Qrob_P0359100.2 Organism . Name  Quercus robur
Score  88.1 Score Type  egn
Protein Description  (M=3) PTHR19308:SF9 - MEMBRANE RELATED PROTEIN-LIKE (PTHR19308:SF9) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 299  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0008289 lipid binding Interacting selectively and non-covalently with a lipid.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_020792 1 264 + 264 Gaps:13 50.09 553 74.73 9e-143 Polyketide cyclase/dehydrase and lipid transport superfamily protein isoform 1
blastp_kegg lcl|csv:101216617 1 264 + 264 Gaps:9 61.28 439 74.72 5e-140 uncharacterized LOC101216617
blastp_kegg lcl|pxb:103939432 1 264 + 264 Gaps:5 61.00 441 74.35 9e-140 stAR-related lipid transfer protein 7 mitochondrial-like
blastp_kegg lcl|pxb:103967245 1 264 + 264 Gaps:5 61.00 441 73.98 4e-139 stAR-related lipid transfer protein 7 mitochondrial-like
blastp_kegg lcl|cmo:103483641 1 264 + 264 Gaps:9 61.28 439 74.35 4e-139 uncharacterized LOC103483641
blastp_kegg lcl|vvi:100263172 1 264 + 264 Gaps:7 60.37 429 77.99 1e-138 stAR-related lipid transfer protein 7 mitochondrial-like
blastp_kegg lcl|mdm:103425717 1 264 + 264 Gaps:5 61.00 441 73.61 5e-137 uncharacterized LOC103425717
blastp_kegg lcl|cic:CICLE_v10005003mg 1 264 + 264 Gaps:7 60.60 434 74.52 3e-134 hypothetical protein
blastp_kegg lcl|pop:POPTR_0008s16250g 1 264 + 264 Gaps:5 61.14 440 75.84 2e-133 POPTRDRAFT_564926 hypothetical protein
blastp_kegg lcl|eus:EUTSA_v10020751mg 1 264 + 264 Gaps:6 61.50 439 70.00 2e-133 hypothetical protein
blastp_pdb 1ln3_B 175 251 + 77 Gaps:3 34.58 214 36.49 3e-08 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_pdb 1ln3_A 175 251 + 77 Gaps:3 34.58 214 36.49 3e-08 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_pdb 1ln2_B 175 251 + 77 Gaps:3 34.58 214 36.49 3e-08 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_pdb 1ln2_A 175 251 + 77 Gaps:3 34.58 214 36.49 3e-08 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_pdb 1ln1_A 175 251 + 77 Gaps:3 34.58 214 36.49 3e-08 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_uniprot_sprot sp|Q8R1R3|STAR7_MOUSE 149 251 + 103 Gaps:7 26.81 373 30.00 2e-08 StAR-related lipid transfer protein 7 mitochondrial OS Mus musculus GN Stard7 PE 2 SV 2
blastp_uniprot_sprot sp|Q9NQZ5|STAR7_HUMAN 153 251 + 99 Gaps:7 25.95 370 30.21 8e-08 StAR-related lipid transfer protein 7 mitochondrial OS Homo sapiens GN STARD7 PE 1 SV 2
blastp_uniprot_sprot sp|Q9UKL6|PPCT_HUMAN 175 251 + 77 Gaps:3 34.58 214 36.49 1e-07 Phosphatidylcholine transfer protein OS Homo sapiens GN PCTP PE 1 SV 1
blastp_uniprot_sprot sp|P02720|PPCT_BOVIN 175 254 + 80 Gaps:3 36.15 213 36.36 2e-07 Phosphatidylcholine transfer protein OS Bos taurus GN PCTP PE 1 SV 1
rpsblast_cdd gnl|CDD|176879 136 265 + 130 Gaps:3 63.64 209 51.88 5e-50 cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2 -7 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein which traffics PtdCho the most common class of phospholipids in eukaryotes between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism in the development of atherosclerosis and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of PtdCho to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers. It showed a preference for phosphatidylserine cholesterol and phosphatidylglycerol.
rpsblast_cdd gnl|CDD|176920 153 251 + 99 Gaps:11 46.38 207 34.38 1e-11 cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers it showed a preference for phosphatidylserine cholesterol and phosphatidylglycerol.
rpsblast_cdd gnl|CDD|176919 156 253 + 98 Gaps:16 49.28 207 32.35 5e-09 cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein which traffics PtdCho the most common class of phospholipids in eukaryotes between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism in the development of atherosclerosis and may have a mitochondrial function.
rpsblast_cdd gnl|CDD|176851 138 252 + 115 Gaps:9 55.96 193 25.93 8e-08 cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15 and related domains such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family specific lipids that bind in this pocket are known these include cholesterol (STARD1/STARD3/ STARD4/STARD5) 25-hydroxycholesterol (STARD5) phosphatidylcholine (STARD2/ STARD7/STARD10) phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular processes including lipid trafficking between intracellular compartments lipid metabolism and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer genetic disorders and autoimmune disease. The Arabidopsis homeobox protein GLABRA 2 suppresses root hair formation in hairless epidermal root cells.
rpsblast_cdd gnl|CDD|197591 152 262 + 111 Gaps:3 53.66 205 23.64 8e-07 smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein.
rpsblast_kog gnl|CDD|37972 129 264 + 136 Gaps:7 62.56 219 49.64 3e-43 KOG2761 KOG2761 KOG2761 START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 156 259 104 PS50848 none START domain profile. IPR002913
PANTHER 11 93 83 PTHR19308:SF9 none none none
PANTHER 132 264 133 PTHR19308:SF9 none none none
Phobius 21 45 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 138 263 126 SSF55961 none none none
PANTHER 11 93 83 PTHR19308 none none none
PANTHER 132 264 133 PTHR19308 none none none
Phobius 94 298 205 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 76 93 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 46 75 30 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 20 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 131 264 134 G3DSA:3.30.530.20 none none IPR023393

2 Localization

Analysis Start End Length
TMHMM 21 43 22
TMHMM 71 93 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting