Protein : Qrob_P0358960.2 Q. robur
Protein Identifier  ? Qrob_P0358960.2 Organism . Name  Quercus robur
Score  89.3 Score Type  egn
Protein Description  (M=4) 2.7.4.1 - Polyphosphate kinase. Code Enzyme  EC:2.7.4.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 710  
Kegg Orthology  K05577
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0008137 NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.
GO:0042773 ATP synthesis coupled electron transport The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103323521 1 641 + 641 Gaps:72 100.00 707 71.29 0.0 NAD(P)H-quinone oxidoreductase subunit 5 chloroplastic
blastp_kegg lcl|sot:4099901 1 648 + 648 Gaps:71 95.40 739 69.93 0.0 ndhF ndh5 SotuCp071 NADH dehydrogenase subunit 5
blastp_kegg lcl|sly:3950404 1 648 + 648 Gaps:71 95.66 737 69.79 0.0 ndhF LyesC2p020 NADH-plastoquinone oxidoreductase subunit 5
blastp_kegg lcl|sot:102603357 1 648 + 648 Gaps:71 98.74 714 69.93 0.0 NAD(P)H-quinone oxidoreductase subunit 5 chloroplastic-like
blastp_kegg lcl|pmum:18668087 1 650 + 650 Gaps:72 96.11 745 69.83 0.0 ndhF CP95_p018 NADH-plastoquinone oxidoreductase subunit 5
blastp_kegg lcl|mtr:MTR_7g021740 1 667 + 667 Gaps:75 90.01 811 66.85 0.0 A subunit of NADH dehydrogenase
blastp_kegg lcl|pop:Poptr_cp077 1 648 + 648 Gaps:82 95.00 760 68.56 0.0 ndhF NADH dehydrogenase subunit 5
blastp_kegg lcl|csv:3429258 1 650 + 650 Gaps:75 95.86 748 68.62 0.0 ndhF ndh5 CsCp132 NADH dehydrogenase subunit 5
blastp_kegg lcl|vvi:4025035 1 650 + 650 Gaps:81 95.73 749 68.06 0.0 ndhF ndh5 ViviCp071 NADH dehydrogenase subunit 5
blastp_kegg lcl|cit:4271110 1 648 + 648 Gaps:73 95.42 743 65.59 0.0 ndhF CisiCp070 NADH dehydrogenase subunit 5
blastp_pdb 3rko_B 71 400 + 330 Gaps:11 52.04 613 47.34 4e-85 mol:protein length:613 NADH-QUINONE OXIDOREDUCTASE SUBUNIT L
blastp_pdb 3rko_L 71 400 + 330 Gaps:11 52.04 613 47.34 4e-85 mol:protein length:613 NADH-QUINONE OXIDOREDUCTASE SUBUNIT L
blastp_pdb 3rko_C 90 388 + 299 Gaps:30 57.96 509 30.51 3e-19 mol:protein length:509 NADH-QUINONE OXIDOREDUCTASE SUBUNIT M
blastp_pdb 3rko_M 90 388 + 299 Gaps:30 57.96 509 30.51 3e-19 mol:protein length:509 NADH-QUINONE OXIDOREDUCTASE SUBUNIT M
blastp_pdb 3rko_D 139 335 + 197 Gaps:14 40.21 485 28.21 4e-09 mol:protein length:485 NADH-QUINONE OXIDOREDUCTASE SUBUNIT N
blastp_pdb 3rko_N 139 335 + 197 Gaps:14 40.21 485 28.21 4e-09 mol:protein length:485 NADH-QUINONE OXIDOREDUCTASE SUBUNIT N
blastp_uniprot_sprot sp|Q32091|NU5C_CARTI 1 650 + 650 Gaps:76 95.83 743 70.08 0.0 NAD(P)H-quinone oxidoreductase subunit 5 chloroplastic OS Carthamus tinctorius GN ndhF PE 3 SV 1
blastp_uniprot_sprot sp|P51095|NU5C_ADEHI 1 650 + 650 Gaps:77 95.83 744 69.85 0.0 NAD(P)H-quinone oxidoreductase subunit 5 chloroplastic OS Adenocaulon himalaicum GN ndhF PE 3 SV 1
blastp_uniprot_sprot sp|P51100|NU5C_GERJA 1 650 + 650 Gaps:77 95.83 744 69.57 0.0 NAD(P)H-quinone oxidoreductase subunit 5 chloroplastic OS Gerbera jamesonii GN ndhF PE 3 SV 1
blastp_uniprot_sprot sp|P51099|NU5C_ATRJA 1 650 + 650 Gaps:77 95.19 749 69.57 0.0 NAD(P)H-quinone oxidoreductase subunit 5 chloroplastic OS Atractylodes japonica GN ndhF PE 3 SV 1
blastp_uniprot_sprot sp|Q8S8V0|NU5C_ATRBE 1 648 + 648 Gaps:71 95.27 740 69.79 0.0 NAD(P)H-quinone oxidoreductase subunit 5 chloroplastic OS Atropa belladonna GN ndhF PE 3 SV 1
blastp_uniprot_sprot sp|P06265|NU5C_TOBAC 1 648 + 648 Gaps:71 95.27 740 69.79 0.0 NAD(P)H-quinone oxidoreductase subunit 5 chloroplastic OS Nicotiana tabacum GN ndhF PE 3 SV 2
blastp_uniprot_sprot sp|Q3C1N9|NU5C_NICSY 1 648 + 648 Gaps:71 95.27 740 69.79 0.0 NAD(P)H-quinone oxidoreductase subunit 5 chloroplastic OS Nicotiana sylvestris GN ndhF PE 3 SV 1
blastp_uniprot_sprot sp|Q33BX5|NU5C_NICTO 1 648 + 648 Gaps:71 95.27 740 69.50 0.0 NAD(P)H-quinone oxidoreductase subunit 5 chloroplastic OS Nicotiana tomentosiformis GN ndhF PE 3 SV 1
blastp_uniprot_sprot sp|Q32551|NU5C_MUTAC 1 650 + 650 Gaps:77 95.83 744 69.14 0.0 NAD(P)H-quinone oxidoreductase subunit 5 chloroplastic OS Mutisia acuminata GN ndhF PE 3 SV 1
blastp_uniprot_sprot sp|Q2VED3|NU5C_SOLTU 1 648 + 648 Gaps:71 95.40 739 69.93 0.0 NAD(P)H-quinone oxidoreductase subunit 5 chloroplastic OS Solanum tuberosum GN ndhF PE 3 SV 1
rpsblast_cdd gnl|CDD|176967 1 648 + 648 Gaps:12 86.91 741 80.28 0.0 CHL00025 ndhF NADH dehydrogenase subunit 5.
rpsblast_cdd gnl|CDD|180952 1 648 + 648 Gaps:30 81.13 673 50.37 1e-162 PRK07376 PRK07376 NAD(P)H-quinone oxidoreductase subunit F Validated.
rpsblast_cdd gnl|CDD|180633 7 643 + 637 Gaps:139 92.63 624 40.48 1e-134 PRK06590 PRK06590 NADH:ubiquinone oxidoreductase subunit L Reviewed.
rpsblast_cdd gnl|CDD|200148 45 650 + 606 Gaps:73 91.79 609 41.32 1e-123 TIGR01974 NDH_I_L proton-translocating NADH-quinone oxidoreductase chain L. This model describes the 12th (based on E. coli) structural gene L of bacterial NADH dehydrogenase I as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex.

47 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 288 312 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 313 327 15 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 8 500 493 PTHR22773:SF76 none none none
Phobius 211 221 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PRINTS 93 113 21 PR01435 none NADH-plastoquinone oxidoreductase chain 5 signature IPR018393
PRINTS 45 64 20 PR01435 none NADH-plastoquinone oxidoreductase chain 5 signature IPR018393
PRINTS 378 400 23 PR01435 none NADH-plastoquinone oxidoreductase chain 5 signature IPR018393
PRINTS 67 91 25 PR01435 none NADH-plastoquinone oxidoreductase chain 5 signature IPR018393
PRINTS 277 299 23 PR01435 none NADH-plastoquinone oxidoreductase chain 5 signature IPR018393
PRINTS 618 644 27 PR01435 none NADH-plastoquinone oxidoreductase chain 5 signature IPR018393
Phobius 480 501 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 6 29 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 350 354 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 8 500 493 PTHR22773 none none none
PANTHER 538 649 112 PTHR22773 none none none
Phobius 111 121 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 188 210 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PRINTS 119 139 21 PR01434 none NADH-ubiquinone oxidoreductase chain 5 signature none
PRINTS 327 339 13 PR01434 none NADH-ubiquinone oxidoreductase chain 5 signature none
PRINTS 259 285 27 PR01434 none NADH-ubiquinone oxidoreductase chain 5 signature none
PRINTS 166 187 22 PR01434 none NADH-ubiquinone oxidoreductase chain 5 signature none
PRINTS 91 116 26 PR01434 none NADH-ubiquinone oxidoreductase chain 5 signature none
PRINTS 237 258 22 PR01434 none NADH-ubiquinone oxidoreductase chain 5 signature none
PANTHER 538 649 112 PTHR22773:SF76 none none none
Phobius 122 140 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 222 240 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 41 61 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 328 349 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 376 479 104 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 142 400 259 PF00361 "Reactome:REACT_6305" NADH-Ubiquinone/plastoquinone (complex I), various chains IPR001750

13 Localization

Analysis Start End Length
TMHMM 538 560 22
TMHMM 222 240 18
TMHMM 7 29 22
TMHMM 260 282 22
TMHMM 289 311 22
TMHMM 355 374 19
TMHMM 148 168 20
TMHMM 39 61 22
TMHMM 121 143 22
TMHMM 326 348 22
TMHMM 188 210 22
TMHMM 89 111 22
TMHMM 479 501 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting