2 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0005524 | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| GO:0009507 | chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. |
22 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pmum:18668109 | 1 | 1680 | + | 1680 | Gaps:84 | 76.46 | 2277 | 89.66 | 0.0 | ycf2 CP95_p003 hypothetical chloroplast RF21 |
| blastp_kegg | lcl|pmum:18668076 | 1 | 1680 | + | 1680 | Gaps:84 | 76.46 | 2277 | 89.66 | 0.0 | ycf2 CP95_p023 hypothetical chloroplast RF21 |
| blastp_kegg | lcl|pper:PrpeC_p083 | 1 | 1680 | + | 1680 | Gaps:84 | 76.46 | 2277 | 89.60 | 0.0 | ycf2 hypothetical chloroplast RF2 |
| blastp_kegg | lcl|pper:PrpeC_p065 | 1 | 1680 | + | 1680 | Gaps:84 | 76.46 | 2277 | 89.60 | 0.0 | ycf2 hypothetical chloroplast RF2 |
| blastp_kegg | lcl|vvi:4025017 | 1 | 1680 | + | 1680 | Gaps:82 | 76.04 | 2300 | 88.85 | 0.0 | ycf2 ViviCp086 Ycf2 |
| blastp_kegg | lcl|vvi:4025027 | 1 | 1680 | + | 1680 | Gaps:82 | 76.04 | 2300 | 88.85 | 0.0 | ycf2 ViviCp066 Ycf2 |
| blastp_kegg | lcl|pop:Poptr_cp098 | 1 | 1680 | + | 1680 | Gaps:78 | 76.37 | 2285 | 88.48 | 0.0 | ycf2 Ycf2 |
| blastp_kegg | lcl|pop:Poptr_cp066 | 1 | 1680 | + | 1680 | Gaps:78 | 76.37 | 2285 | 88.48 | 0.0 | ycf2 Ycf2 |
| blastp_kegg | lcl|rcu:RCOM_ORF00127 | 1 | 1680 | + | 1680 | Gaps:75 | 76.38 | 2286 | 88.32 | 0.0 | ycf2 Ycf2 |
| blastp_kegg | lcl|rcu:RCOM_ORF00088 | 1 | 1680 | + | 1680 | Gaps:75 | 76.38 | 2286 | 88.32 | 0.0 | ycf2 Ycf2 |
| blastp_uniprot_sprot | sp|Q09WV7|YCF2_MORIN | 1 | 1678 | + | 1678 | Gaps:84 | 76.31 | 2292 | 89.25 | 0.0 | Protein Ycf2 OS Morus indica GN ycf2-A PE 3 SV 1 |
| blastp_uniprot_sprot | sp|B1A978|YCF2_CARPA | 1 | 1680 | + | 1680 | Gaps:84 | 76.02 | 2298 | 89.35 | 0.0 | Protein Ycf2 OS Carica papaya GN ycf2-A PE 3 SV 1 |
| blastp_uniprot_sprot | sp|Q0ZIV6|YCF2_VITVI | 1 | 1680 | + | 1680 | Gaps:82 | 76.04 | 2300 | 88.85 | 0.0 | Protein Ycf2 OS Vitis vinifera GN ycf2-A PE 3 SV 1 |
| blastp_uniprot_sprot | sp|A4GYV4|YCF2_POPTR | 1 | 1680 | + | 1680 | Gaps:78 | 76.37 | 2285 | 88.48 | 0.0 | Protein Ycf2 OS Populus trichocarpa GN ycf2-1 PE 3 SV 1 |
| blastp_uniprot_sprot | sp|Q14F97|YCF2_POPAL | 1 | 1680 | + | 1680 | Gaps:81 | 76.34 | 2282 | 88.35 | 0.0 | Protein Ycf2 OS Populus alba GN ycf2-A PE 3 SV 1 |
| blastp_uniprot_sprot | sp|Q49KT6|YCF2_EUCGG | 1 | 1680 | + | 1680 | Gaps:80 | 76.36 | 2280 | 88.28 | 0.0 | Protein Ycf2 OS Eucalyptus globulus subsp. globulus GN ycf2-A PE 3 SV 1 |
| blastp_uniprot_sprot | sp|Q2L949|YCF2_GOSHI | 1 | 1680 | + | 1680 | Gaps:84 | 76.02 | 2298 | 88.44 | 0.0 | Protein Ycf2 OS Gossypium hirsutum GN ycf2-A PE 3 SV 1 |
| blastp_uniprot_sprot | sp|P09976|YCF2_TOBAC | 1 | 1680 | + | 1680 | Gaps:83 | 76.23 | 2280 | 86.88 | 0.0 | Protein Ycf2 OS Nicotiana tabacum GN ycf2-A PE 3 SV 2 |
| blastp_uniprot_sprot | sp|Q3C1N4|YCF2_NICSY | 1 | 1680 | + | 1680 | Gaps:83 | 76.23 | 2280 | 86.88 | 0.0 | Protein Ycf2 OS Nicotiana sylvestris GN ycf2-A PE 3 SV 1 |
| blastp_uniprot_sprot | sp|Q33BV3|YCF2_NICTO | 1 | 1680 | + | 1680 | Gaps:83 | 76.23 | 2280 | 86.82 | 0.0 | Protein Ycf2 OS Nicotiana tomentosiformis GN ycf2-A PE 3 SV 1 |
| rpsblast_cdd | gnl|CDD|177097 | 1 | 1680 | + | 1680 | Gaps:81 | 76.37 | 2281 | 89.61 | 0.0 | CHL00206 ycf2 Ycf2 Provisional. |
| rpsblast_cdd | gnl|CDD|147703 | 1 | 1416 | + | 1416 | Gaps:92 | 100.00 | 1170 | 74.27 | 0.0 | pfam05695 DUF825 Plant protein of unknown function (DUF825). This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown. |
12 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Phobius | 21 | 40 | 20 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 1296 | 1680 | 385 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Phobius | 70 | 88 | 19 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 89 | 804 | 716 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Phobius | 1 | 20 | 20 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Phobius | 805 | 827 | 23 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 41 | 69 | 29 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Pfam | 524 | 1416 | 893 | PF05695 | none | Plant protein of unknown function (DUF825) | IPR008543 |
| Pfam | 1 | 525 | 525 | PF05695 | none | Plant protein of unknown function (DUF825) | IPR008543 |
| Pfam | 1411 | 1459 | 49 | PF05695 | none | Plant protein of unknown function (DUF825) | IPR008543 |
| Phobius | 828 | 1272 | 445 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Phobius | 1273 | 1295 | 23 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
12 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2014_nLBD*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 34,91 | 16,12 | 53,62 | lod | 2,4961 | 5,2 |
| Bourran2_2014_nPriLBD_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,36 | 0 | 30,43 | lod | 2,5806 | 5,1 |
| Bourran2_2014_nSecLBD_A4 | Qrob_Chr07 | 7 | v_8327_222 | s_1A4WGY_363 | 16,04 | 0 | 44,69 | lod | 2,6373 | 6,5 |
| Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
| Bourran2_2015_nSeqBC_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 26,06 | 25,47 | 27,72 | lod | 3.6 | 7.1 |
| Bourran2_2014_nP_3P | Qrob_Chr11 | 11 | v_11486_194 | s_1AT3E_2335 | 7,9 | 0,09 | 30,09 | lod | 2,3636 | 5 |
| Bourran2_2015_nEpis_A4 | Qrob_Chr09 | 9 | v_15847_485 | v_8329_369 | 34,94 | 34,88 | 37,45 | lod | 3.1 | 7 |
| Bourran2_2015_nEpiBC_A4 | Qrob_Chr07 | 7 | s_1DP9TW_798 | v_8128_173 | 22,61 | 22,14 | 22,73 | lod | 3.1 | 8.5 |
| Bourran2_2014_nEpiBC_A4 | Qrob_Chr07 | 7 | s_2FI9D9_500 | s_1AXDMJ_325 | 12,26 | 0 | 34,9 | lod | 2,2306 | 6,1 |
| Bourran2_2014_nPriBD_3P | Qrob_Chr11 | 11 | v_11486_194 | s_1AT3E_2335 | 5,54 | 0,4 | 20,6 | lod | 2,6345 | 5,9 |
| Bourran2_2002_QTL10_peak_Bud_burst_3P | Qrob_Chr07 | 7 | s_1CAWP_311 | s_1BEZ9M_461 | 7,5 | 0 | 21,5 | lod | 3,7 | 6,3 |
| Bourran2_2014_nPriBD*_A4 | Qrob_Chr07 | 7 | s_1A7UI0_596 | s_1A3H6S_352 | 8,02 | 0 | 20,53 | lod | 4,1062 | 10,8 |
