Protein : Qrob_P0358860.2 Q. robur
Protein Identifier  ? Qrob_P0358860.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K02703 - photosystem II P680 reaction center D1 protein Code Enzyme  EC:1.10.3.9
Gene Prediction Quality  validated Protein length 

Sequence

Length: 356  
Kegg Orthology  K02703
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0009055 electron carrier activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0009772 photosynthetic electron transport in photosystem II A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, Q) through a chain of electron transport molecules in the thylakoid membrane until they reach the ultimate electron acceptor of Photosystem II, which is plastocyanin (PC). The electron is then passed to the P700 chlorophyll a molecules of the reaction centre of photosystem I.
GO:0019684 photosynthesis, light reaction The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity Enables the directed movement of electrons within the cyclic electron transport pathway of photosynthesis.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_ORF00003 1 355 + 355 Gaps:2 100.00 353 99.72 0.0 psbA photosystem II protein D1
blastp_kegg lcl|eus:EUTSA_v10028093mg 1 355 + 355 Gaps:2 100.00 353 99.72 0.0 hypothetical protein
blastp_kegg lcl|ath:ArthCp002 1 355 + 355 Gaps:2 100.00 353 99.72 0.0 psbA photosystem II protein D1
blastp_kegg lcl|sot:4099946 1 355 + 355 Gaps:2 100.00 353 99.43 0.0 psbA SotuCp001 photosystem II protein D1
blastp_kegg lcl|sly:3950408 1 355 + 355 Gaps:2 100.00 353 99.43 0.0 psbA LyesC2p089 photosystem II protein D1
blastp_kegg lcl|pop:Poptr_cp001 1 355 + 355 Gaps:2 100.00 353 99.43 0.0 psbA photosystem II protein D1
blastp_kegg lcl|tcc:ThcaC_p001 1 355 + 355 Gaps:2 100.00 353 99.15 0.0 psbA photosystem II protein D1
blastp_kegg lcl|atr:s00390p00002060 1 355 + 355 Gaps:2 100.00 353 99.15 0.0 AMTR_s00390p00002060 hypothetical protein
blastp_kegg lcl|pvu:PhvuCp04 1 355 + 355 Gaps:2 100.00 353 99.15 0.0 psbA photosystem II protein D1
blastp_kegg lcl|gmx:3989259 1 355 + 355 Gaps:2 100.00 353 98.87 0.0 psbA GlmaCp001 photosystem II protein D1
blastp_pdb 2axt_A 1 346 + 346 Gaps:2 100.00 344 87.50 0.0 mol:protein length:344 Photosystem Q(B) protein
blastp_pdb 1s5l_A 1 346 + 346 Gaps:2 100.00 344 87.50 0.0 mol:protein length:344 Photosystem Q(B) protein
blastp_pdb 3arc_A 1 346 + 346 Gaps:2 100.00 344 87.21 0.0 mol:protein length:344 Photosystem Q(B) protein
blastp_pdb 3a0h_A 1 346 + 346 Gaps:2 100.00 344 86.92 0.0 mol:protein length:344 Photosystem Q(B) protein
blastp_pdb 3a0b_A 1 346 + 346 Gaps:2 100.00 344 86.92 0.0 mol:protein length:344 Photosystem Q(B) protein
blastp_pdb 1w5c_G 1 355 + 355 Gaps:9 100.00 360 85.56 0.0 mol:protein length:360 PHOTOSYSTEM Q(B) PROTEIN 1
blastp_pdb 1w5c_A 1 355 + 355 Gaps:9 100.00 360 85.56 0.0 mol:protein length:360 PHOTOSYSTEM Q(B) PROTEIN 1
blastp_pdb 1izl_J 1 355 + 355 Gaps:9 100.00 360 85.00 0.0 mol:protein length:360 Photosystem II: Subunit PsbA
blastp_pdb 1izl_A 1 355 + 355 Gaps:9 100.00 360 85.00 0.0 mol:protein length:360 Photosystem II: Subunit PsbA
blastp_pdb 3prr_A 1 346 + 346 Gaps:2 100.00 344 87.50 0.0 mol:protein length:344 Photosystem Q(B) protein 1
blastp_uniprot_sprot sp|Q09G66|PSBA_PLAOC 1 355 + 355 Gaps:2 100.00 353 99.72 0.0 Photosystem Q(B) protein OS Platanus occidentalis GN psbA PE 3 SV 1
blastp_uniprot_sprot sp|Q06FY1|PSBA_PELHO 1 355 + 355 Gaps:2 100.00 353 99.72 0.0 Photosystem Q(B) protein OS Pelargonium hortorum GN psbA PE 3 SV 1
blastp_uniprot_sprot sp|A4QJR4|PSBA_OLIPU 1 355 + 355 Gaps:2 100.00 353 99.72 0.0 Photosystem Q(B) protein OS Olimarabidopsis pumila GN psbA PE 3 SV 1
blastp_uniprot_sprot sp|B0Z5A8|PSBA_OENPA 1 355 + 355 Gaps:2 100.00 353 99.72 0.0 Photosystem Q(B) protein OS Oenothera parviflora GN psbA PE 3 SV 1
blastp_uniprot_sprot sp|B0Z524|PSBA_OENGL 1 355 + 355 Gaps:2 100.00 353 99.72 0.0 Photosystem Q(B) protein OS Oenothera glazioviana GN psbA PE 3 SV 1
blastp_uniprot_sprot sp|P83756|PSBA_OENEH 1 355 + 355 Gaps:2 100.00 353 99.72 0.0 Photosystem Q(B) protein OS Oenothera elata subsp. hookeri GN psbA PE 3 SV 2
blastp_uniprot_sprot sp|B0Z4U0|PSBA_OENBI 1 355 + 355 Gaps:2 100.00 353 99.72 0.0 Photosystem Q(B) protein OS Oenothera biennis GN psbA PE 3 SV 1
blastp_uniprot_sprot sp|B0Z4K6|PSBA_OENAR 1 355 + 355 Gaps:2 100.00 353 99.72 0.0 Photosystem Q(B) protein OS Oenothera argillicola GN psbA PE 3 SV 1
blastp_uniprot_sprot sp|A4QLR3|PSBA_NASOF 1 355 + 355 Gaps:2 100.00 353 99.72 0.0 Photosystem Q(B) protein OS Nasturtium officinale GN psbA PE 3 SV 1
blastp_uniprot_sprot sp|B1NWD0|PSBA_MANES 1 355 + 355 Gaps:2 100.00 353 99.72 0.0 Photosystem Q(B) protein OS Manihot esculenta GN psbA PE 3 SV 1

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 298 355 58 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 30 331 302 PF00124 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Photosynthetic reaction centre protein IPR000484
PRINTS 199 225 27 PR00256 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Bacterial photosynthetic reaction centre signature IPR000484
PRINTS 111 139 29 PR00256 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Bacterial photosynthetic reaction centre signature IPR000484
PRINTS 144 166 23 PR00256 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Bacterial photosynthetic reaction centre signature IPR000484
TIGRFAM 1 350 350 TIGR01151 "MetaCyc:PWY-101","MetaCyc:PWY-6785" psbA: photosystem II q(b) protein IPR005867
Phobius 78 99 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 14 345 332 SSF81483 "MetaCyc:PWY-101","MetaCyc:PWY-6785" none IPR000484
Phobius 111 131 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 164 168 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 143 314 172 G3DSA:1.20.85.10 "MetaCyc:PWY-101","MetaCyc:PWY-6785" none IPR000484
Hamap 1 349 349 MF_01379 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Photosystem II protein D1 [psbA]. IPR005867
Phobius 221 274 54 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 193 219 27 PS00244 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Photosynthetic reaction center proteins signature. IPR000484
Phobius 132 142 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 169 188 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 58 77 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 200 220 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 275 297 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 31 57 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 30 30 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 100 110 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 189 199 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 143 163 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

7 Localization

Analysis Start End Length
TMHMM 107 129 22
TMHMM 173 195 22
TMHMM 144 166 22
TMHMM 73 95 22
TMHMM 275 297 22
TMHMM 199 221 22
TMHMM 31 53 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting