Protein : Qrob_P0355800.2 Q. robur
Protein Identifier  ? Qrob_P0355800.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K09481 - protein transport protein SEC61 subunit beta Gene Prediction Quality  validated
Protein length 

Sequence

Length: 110  
Kegg Orthology  K09481
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0005784 Sec61 translocon complex A translocon complex that contains a core heterotrimer of conserved alpha, beta and gamma subunits, and may contain additional proteins (translocon-associated proteins or TRAPs); in budding yeast the core proteins are Sec61p, Sbh1p, and Sss1p. The Sec61 translocon complex functions in cotranslational and posttranslational translocation events.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:101491607 1 107 + 107 Gaps:6 98.10 105 81.55 3e-42 protein transport protein Sec61 subunit beta-like
blastp_kegg lcl|pvu:PHAVU_005G136600g 1 109 + 109 Gaps:4 100.00 105 82.86 2e-41 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_003G173500g 1 102 + 102 Gaps:5 93.40 106 81.82 2e-40 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_011G073900g 1 102 + 102 Gaps:5 93.40 106 81.82 2e-40 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1401130 1 106 + 106 Gaps:9 97.17 106 82.52 1e-39 Protein transport protein Sec61 subunit beta putative
blastp_kegg lcl|vvi:100260422 1 107 + 107 Gaps:6 98.13 107 77.14 6e-39 protein transport protein Sec61 subunit beta-like
blastp_kegg lcl|csv:101229728 17 107 + 91 Gaps:3 82.57 109 86.67 4e-38 protein transport protein Sec61 subunit beta-like
blastp_kegg lcl|csv:101211539 17 107 + 91 Gaps:3 82.57 109 86.67 4e-38 protein transport protein Sec61 subunit beta-like
blastp_kegg lcl|cmo:103501938 17 107 + 91 Gaps:3 82.57 109 85.56 4e-38 protein transport protein Sec61 subunit beta
blastp_kegg lcl|pxb:103935143 7 109 + 103 Gaps:2 100.00 101 75.25 1e-35 protein transport protein Sec61 subunit beta-like
blastp_pdb 2wwb_C 28 102 + 75 Gaps:5 72.92 96 52.86 2e-13 mol:protein length:96 PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA
blastp_pdb 2wwa_C 33 100 + 68 Gaps:4 82.76 87 33.33 2e-06 mol:protein length:87 PROTEIN TRANSPORT PROTEIN SEB2
blastp_pdb 2ww9_C 33 100 + 68 Gaps:4 82.76 87 33.33 2e-06 mol:protein length:87 PROTEIN TRANSPORT PROTEIN SEB2
blastp_uniprot_sprot sp|P38389|SC61B_ARATH 24 101 + 78 Gaps:7 86.59 82 67.61 1e-19 Protein transport protein Sec61 subunit beta OS Arabidopsis thaliana GN At2g45070 PE 3 SV 1
blastp_uniprot_sprot sp|Q9CQS8|SC61B_MOUSE 28 102 + 75 Gaps:5 72.92 96 52.86 6e-13 Protein transport protein Sec61 subunit beta OS Mus musculus GN Sec61b PE 1 SV 3
blastp_uniprot_sprot sp|Q5RB31|SC61B_PONAB 28 102 + 75 Gaps:5 72.92 96 52.86 6e-13 Protein transport protein Sec61 subunit beta OS Pongo abelii GN SEC61B PE 3 SV 3
blastp_uniprot_sprot sp|P60468|SC61B_HUMAN 28 102 + 75 Gaps:5 72.92 96 52.86 6e-13 Protein transport protein Sec61 subunit beta OS Homo sapiens GN SEC61B PE 1 SV 2
blastp_uniprot_sprot sp|P60467|SC61B_CANFA 28 102 + 75 Gaps:5 72.92 96 52.86 6e-13 Protein transport protein Sec61 subunit beta OS Canis familiaris GN SEC61B PE 1 SV 2
blastp_uniprot_sprot sp|Q54YR4|SC61B_DICDI 56 104 + 49 Gaps:2 80.33 61 59.18 2e-11 Protein transport protein Sec61 subunit beta OS Dictyostelium discoideum GN sec61b PE 3 SV 1
blastp_uniprot_sprot sp|Q9HFC7|SC61B_YARLI 31 100 + 70 Gaps:5 80.22 91 42.47 5e-11 Protein transport protein Sec61 subunit beta OS Yarrowia lipolytica (strain CLIB 122 / E 150) GN SBH1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8J2P4|SC61B_KLULA 53 100 + 48 none 54.55 88 43.75 1e-07 Protein transport protein Sec61 subunit beta OS Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN SBH1 PE 3 SV 1
blastp_uniprot_sprot sp|O43002|SC61B_SCHPO 58 106 + 49 none 48.04 102 38.78 3e-07 Protein transport protein sec61 subunit beta OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN sbh1 PE 3 SV 1
blastp_uniprot_sprot sp|P52870|SC6B1_YEAST 33 100 + 68 Gaps:3 79.27 82 33.85 8e-07 Protein transport protein SBH1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SBH1 PE 1 SV 1
rpsblast_cdd gnl|CDD|202805 58 98 + 41 none 100.00 41 56.10 3e-13 pfam03911 Sec61_beta Sec61beta family. This family consists of homologues of Sec61beta - a component of the Sec61/SecYEG protein secretory system. The domain is found in eukaryotes and archaea and is possibly homologous to the bacterial SecG. It consists of a single putative transmembrane helix preceded by a short stretch containing various charged residues this arrangement may help determine orientation in the cell membrane.
rpsblast_kog gnl|CDD|38667 22 105 + 84 Gaps:1 94.32 88 55.42 6e-16 KOG3457 KOG3457 KOG3457 Sec61 protein translocation complex beta subunit [Posttranslational modification protein turnover chaperones].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PIRSF 6 106 101 PIRSF006398 none none IPR030671
Phobius 75 97 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 109 109 PTHR13509 none none IPR030671
Phobius 1 74 74 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 98 109 12 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 58 98 41 PF03911 none Sec61beta family IPR016482

2 Localization

Analysis Start End Length
TMHMM 75 97 22
TMHMM 38 60 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting