Protein : Qrob_P0353340.2 Q. robur
Protein Identifier  ? Qrob_P0353340.2 Organism . Name  Quercus robur
Score  37.0 Score Type  egn
Protein Description  (M=8) PF00060//PF00497 - Ligand-gated ion channel // Bacterial extracellular solute-binding proteins, family 3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 525  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004970 ionotropic glutamate receptor activity Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0004s05170g 47 523 + 477 Gaps:5 60.71 784 61.97 0.0 POPTRDRAFT_758820 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s05180g 47 523 + 477 Gaps:11 51.13 931 61.97 0.0 POPTRDRAFT_817827 hypothetical protein
blastp_kegg lcl|tcc:TCM_029764 46 501 + 456 Gaps:4 41.04 1111 64.25 0.0 Glutamate-gated kainate-type ion channel receptor subunit GluR5 putative
blastp_kegg lcl|pmum:103324853 46 523 + 478 Gaps:8 51.97 916 58.82 0.0 glutamate receptor 2.7-like
blastp_kegg lcl|fve:101291488 45 523 + 479 Gaps:15 55.81 860 57.71 7e-174 glutamate receptor 2.7-like
blastp_kegg lcl|gmx:100780320 44 509 + 466 Gaps:13 51.06 899 56.21 3e-170 glutamate receptor 2.7-like
blastp_kegg lcl|pvu:PHAVU_003G057300g 46 492 + 447 Gaps:6 49.94 895 57.94 3e-170 hypothetical protein
blastp_kegg lcl|pxb:103938632 46 522 + 477 Gaps:9 51.81 911 57.20 2e-169 glutamate receptor 2.7-like
blastp_kegg lcl|rcu:RCOM_1012900 45 458 + 414 Gaps:5 48.75 843 62.77 7e-168 glutamate receptor 2 plant putative
blastp_kegg lcl|fve:101307383 45 522 + 478 Gaps:9 52.84 899 54.11 1e-167 glutamate receptor 2.7-like
blastp_pdb 3kg2_D 84 449 + 366 Gaps:65 49.21 823 24.44 5e-18 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_C 84 449 + 366 Gaps:65 49.21 823 24.44 5e-18 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_B 84 449 + 366 Gaps:65 49.21 823 24.44 5e-18 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_A 84 449 + 366 Gaps:65 49.21 823 24.44 5e-18 mol:protein length:823 Glutamate receptor 2
blastp_uniprot_sprot sp|Q8GXJ4|GLR34_ARATH 45 490 + 446 Gaps:38 45.26 959 41.24 3e-95 Glutamate receptor 3.4 OS Arabidopsis thaliana GN GLR3.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q93YT1|GLR32_ARATH 43 458 + 416 Gaps:17 45.94 912 39.14 7e-93 Glutamate receptor 3.2 OS Arabidopsis thaliana GN GLR3.2 PE 1 SV 2
blastp_uniprot_sprot sp|Q7XJL2|GLR31_ARATH 43 458 + 416 Gaps:17 45.71 921 39.43 7e-91 Glutamate receptor 3.1 OS Arabidopsis thaliana GN GLR3.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q84W41|GLR36_ARATH 45 449 + 405 Gaps:21 45.40 903 39.27 8e-91 Glutamate receptor 3.6 OS Arabidopsis thaliana GN GLR3.6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C8E7|GLR33_ARATH 47 461 + 415 Gaps:26 45.98 933 38.46 6e-90 Glutamate receptor 3.3 OS Arabidopsis thaliana GN GLR3.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LGN0|GLR27_ARATH 43 454 + 412 Gaps:16 43.49 952 40.82 7e-90 Glutamate receptor 2.7 OS Arabidopsis thaliana GN GLR2.7 PE 2 SV 3
blastp_uniprot_sprot sp|Q9SDQ4|GLR37_ARATH 47 456 + 410 Gaps:16 45.17 921 36.78 1e-88 Glutamate receptor 3.7 OS Arabidopsis thaliana GN GLR3.7 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SW97|GLR35_ARATH 45 454 + 410 Gaps:18 43.86 953 41.39 1e-87 Glutamate receptor 3.5 OS Arabidopsis thaliana GN GLR3.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q7XP59|GLR31_ORYSJ 40 458 + 419 Gaps:21 45.20 938 40.57 6e-86 Glutamate receptor 3.1 OS Oryza sativa subsp. japonica GN GLR3.1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LFN5|GLR25_ARATH 46 457 + 412 Gaps:23 45.64 918 39.38 1e-84 Glutamate receptor 2.5 OS Arabidopsis thaliana GN GLR2.5 PE 2 SV 2
rpsblast_cdd gnl|CDD|189368 180 426 + 247 Gaps:18 98.88 268 30.57 2e-44 pfam00060 Lig_chan Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.
rpsblast_cdd gnl|CDD|197504 279 396 + 118 Gaps:8 93.23 133 25.81 2e-11 smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb.
rpsblast_cdd gnl|CDD|201266 83 167 + 85 Gaps:4 36.82 220 27.16 9e-08 pfam00497 SBP_bac_3 Bacterial extracellular solute-binding proteins family 3.
rpsblast_kog gnl|CDD|36270 40 445 + 406 Gaps:32 64.63 656 29.01 2e-62 KOG1052 KOG1052 KOG1052 Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36272 84 487 + 404 Gaps:57 48.05 897 23.20 2e-22 KOG1054 KOG1054 KOG1054 Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36271 89 437 + 349 Gaps:53 29.89 1258 25.80 6e-21 KOG1053 KOG1053 KOG1053 Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 240 258 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 177 425 249 PF00060 none Ligand-gated ion channel IPR001320
SUPERFAMILY 19 182 164 SSF53850 none none none
SUPERFAMILY 284 395 112 SSF53850 none none none
Phobius 15 33 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 45 452 408 PTHR18966 none none none
Pfam 83 395 313 PF00497 none Bacterial extracellular solute-binding proteins, family 3 none
Phobius 199 209 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 210 228 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 418 437 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 353 394 42 G3DSA:3.40.190.10 none none none
Gene3D 56 153 98 G3DSA:3.40.190.10 none none none
Phobius 229 239 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 14 14 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 45 452 408 PTHR18966:SF6 none none none
Gene3D 168 304 137 G3DSA:1.10.287.70 none none none
Phobius 34 179 146 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SMART 60 396 337 SM00079 none Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IPR001320
Phobius 180 198 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 438 524 87 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 259 417 159 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

6 Localization

Analysis Start End Length
TMHMM 418 440 22
SignalP_GRAM_POSITIVE 1 40 39
TMHMM 237 259 22
TMHMM 213 230 17
TMHMM 15 34 19
TMHMM 181 198 17

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting