Protein : Qrob_P0353330.2 Q. robur
Protein Identifier  ? Qrob_P0353330.2 Organism . Name  Quercus robur
Score  9.0 Score Type  egn
Protein Description  (M=1) KOG1052//KOG1054 - Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 314  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004970 ionotropic glutamate receptor activity Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101308388 10 313 + 304 Gaps:19 91.57 344 48.89 6e-98 glutamate receptor 3.1-like
blastp_kegg lcl|pmum:103324853 1 297 + 297 Gaps:21 33.84 916 54.19 5e-94 glutamate receptor 2.7-like
blastp_kegg lcl|gmx:100817551 1 304 + 304 Gaps:37 35.96 926 50.15 3e-90 glutamate receptor 2.7-like
blastp_kegg lcl|gmx:100818078 1 292 + 292 Gaps:27 33.88 918 50.48 2e-89 glutamate receptor 2.7-like
blastp_kegg lcl|fve:101307383 1 290 + 290 Gaps:21 33.48 899 49.17 2e-88 glutamate receptor 2.7-like
blastp_kegg lcl|pop:POPTR_0004s05170g 1 291 + 291 Gaps:20 38.90 784 53.77 3e-88 POPTRDRAFT_758820 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1012900 1 262 + 262 Gaps:18 32.50 843 57.30 3e-88 glutamate receptor 2 plant putative
blastp_kegg lcl|fve:101291488 1 290 + 290 Gaps:22 35.35 860 53.29 2e-87 glutamate receptor 2.7-like
blastp_kegg lcl|fve:101298055 10 313 + 304 Gaps:19 92.92 339 48.25 3e-86 glutamate receptor 3.2-like
blastp_kegg lcl|pop:POPTR_0004s05180g 1 291 + 291 Gaps:20 32.76 931 54.43 7e-86 POPTRDRAFT_817827 hypothetical protein
blastp_pdb 3kg2_D 2 277 + 276 Gaps:54 38.40 823 25.00 4e-11 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_C 2 277 + 276 Gaps:54 38.40 823 25.00 4e-11 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_B 2 277 + 276 Gaps:54 38.40 823 25.00 4e-11 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_A 2 277 + 276 Gaps:54 38.40 823 25.00 4e-11 mol:protein length:823 Glutamate receptor 2
blastp_uniprot_sprot sp|Q93YT1|GLR32_ARATH 2 276 + 275 Gaps:21 31.58 912 30.90 2e-42 Glutamate receptor 3.2 OS Arabidopsis thaliana GN GLR3.2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9C8E7|GLR33_ARATH 2 260 + 259 Gaps:25 28.94 933 34.07 2e-42 Glutamate receptor 3.3 OS Arabidopsis thaliana GN GLR3.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XJL2|GLR31_ARATH 2 260 + 259 Gaps:23 29.10 921 35.45 4e-42 Glutamate receptor 3.1 OS Arabidopsis thaliana GN GLR3.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q8GXJ4|GLR34_ARATH 2 267 + 266 Gaps:27 29.09 959 35.84 8e-42 Glutamate receptor 3.4 OS Arabidopsis thaliana GN GLR3.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q84W41|GLR36_ARATH 2 308 + 307 Gaps:28 35.55 903 31.15 1e-41 Glutamate receptor 3.6 OS Arabidopsis thaliana GN GLR3.6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LFN5|GLR25_ARATH 1 267 + 267 Gaps:24 30.61 918 33.45 6e-41 Glutamate receptor 2.5 OS Arabidopsis thaliana GN GLR2.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFN8|GLR26_ARATH 1 285 + 285 Gaps:28 30.71 967 32.32 2e-38 Glutamate receptor 2.6 OS Arabidopsis thaliana GN GLR2.6 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGN0|GLR27_ARATH 1 252 + 252 Gaps:17 27.63 952 33.84 7e-38 Glutamate receptor 2.7 OS Arabidopsis thaliana GN GLR2.7 PE 2 SV 3
blastp_uniprot_sprot sp|Q7XP59|GLR31_ORYSJ 2 278 + 277 Gaps:32 31.45 938 33.56 1e-36 Glutamate receptor 3.1 OS Oryza sativa subsp. japonica GN GLR3.1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SDQ4|GLR37_ARATH 1 278 + 278 Gaps:24 31.92 921 31.29 2e-36 Glutamate receptor 3.7 OS Arabidopsis thaliana GN GLR3.7 PE 2 SV 2
rpsblast_cdd gnl|CDD|189368 10 242 + 233 Gaps:35 97.76 268 28.24 7e-38 pfam00060 Lig_chan Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.
rpsblast_cdd gnl|CDD|197504 128 211 + 84 Gaps:12 64.66 133 33.72 1e-10 smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb.
rpsblast_kog gnl|CDD|36270 2 270 + 269 Gaps:38 44.66 656 25.94 5e-33 KOG1052 KOG1052 KOG1052 Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36272 2 270 + 269 Gaps:62 34.23 897 24.43 2e-12 KOG1054 KOG1054 KOG1054 Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 8 242 235 PF00060 none Ligand-gated ion channel IPR001320
Phobius 236 256 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 7 28 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 89 235 147 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 40 58 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SMART 21 215 195 SM00079 none Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IPR001320
SUPERFAMILY 82 210 129 SSF53850 none none none
PANTHER 1 313 313 PTHR18966 none none none
Phobius 29 39 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 173 210 38 G3DSA:3.40.190.10 none none none
Phobius 59 69 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 257 313 57 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 2 136 135 G3DSA:1.10.287.70 none none none
Phobius 70 88 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 313 313 PTHR18966:SF6 none none none
Phobius 1 6 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

3 Localization

Analysis Start End Length
TMHMM 71 90 19
TMHMM 44 58 14
TMHMM 7 29 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting