Protein : Qrob_P0349620.2 Q. robur
Protein Identifier  ? Qrob_P0349620.2 Organism . Name  Quercus robur
Score  43.3 Score Type  egn
Protein Description  (M=1) K12190 - ESCRT-II complex subunit VPS36 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 404  
Kegg Orthology  K12190
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0032266 phosphatidylinositol-3-phosphate binding Interacting selectively and non-covalently with phosphatidylinositol-3-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' position.
GO:0043130 ubiquitin binding Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0904150 4 367 + 364 Gaps:14 80.18 439 75.28 0.0 Vacuolar protein sorting protein putative
blastp_kegg lcl|csv:101213934 1 367 + 367 Gaps:21 80.64 439 74.01 0.0 vacuolar protein sorting-associated protein 36-like
blastp_kegg lcl|pmum:103331070 1 367 + 367 Gaps:28 81.22 442 74.93 7e-180 vacuolar protein sorting-associated protein 36
blastp_kegg lcl|mdm:103418492 1 361 + 361 Gaps:28 83.33 426 75.49 9e-180 vacuolar protein sorting-associated protein 36-like
blastp_kegg lcl|pper:PRUPE_ppa005815mg 1 360 + 360 Gaps:28 79.64 442 75.85 1e-179 hypothetical protein
blastp_kegg lcl|pxb:103946125 1 368 + 368 Gaps:26 81.61 446 74.18 3e-179 vacuolar protein sorting-associated protein 36
blastp_kegg lcl|cmo:103488431 1 367 + 367 Gaps:19 80.64 439 71.75 2e-177 vacuolar protein sorting-associated protein 36
blastp_kegg lcl|fve:101313204 1 361 + 361 Gaps:28 79.95 444 73.80 1e-176 vacuolar protein sorting-associated protein 36-like
blastp_kegg lcl|pvu:PHAVU_011G187600g 1 361 + 361 Gaps:20 80.22 450 72.02 1e-175 hypothetical protein
blastp_kegg lcl|mdm:103428437 1 360 + 360 Gaps:32 96.42 363 75.43 7e-174 vacuolar protein sorting-associated protein 36-like
blastp_pdb 2zme_B 180 367 + 188 Gaps:9 76.89 238 46.99 1e-50 mol:protein length:238 Vacuolar protein-sorting-associated protein 3
blastp_pdb 3cuq_B 201 367 + 167 Gaps:9 74.31 218 48.15 1e-44 mol:protein length:218 Vacuolar protein-sorting-associated protein 3
blastp_uniprot_sprot sp|Q9FF81|VPS36_ARATH 9 361 + 353 Gaps:21 75.91 440 70.36 2e-160 Vacuolar protein sorting-associated protein 36 OS Arabidopsis thaliana GN VPS36 PE 1 SV 1
blastp_uniprot_sprot sp|Q7ZVK4|VPS36_DANRE 45 364 + 320 Gaps:44 76.96 382 40.82 2e-56 Vacuolar protein-sorting-associated protein 36 OS Danio rerio GN vps36 PE 2 SV 1
blastp_uniprot_sprot sp|Q91XD6|VPS36_MOUSE 47 367 + 321 Gaps:44 76.42 386 40.00 4e-55 Vacuolar protein-sorting-associated protein 36 OS Mus musculus GN Vps36 PE 1 SV 1
blastp_uniprot_sprot sp|Q86VN1|VPS36_HUMAN 47 367 + 321 Gaps:44 76.42 386 40.00 1e-54 Vacuolar protein-sorting-associated protein 36 OS Homo sapiens GN VPS36 PE 1 SV 1
blastp_uniprot_sprot sp|P0C0A2|VPS36_RAT 47 367 + 321 Gaps:44 76.42 386 39.66 2e-54 Vacuolar protein-sorting-associated protein 36 OS Rattus norvegicus GN Vps36 PE 1 SV 1
blastp_uniprot_sprot sp|A5PK00|VPS36_BOVIN 48 367 + 320 Gaps:44 76.17 386 40.14 3e-54 Vacuolar protein-sorting-associated protein 36 OS Bos taurus GN VPS36 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DDF4|VPS36_XENLA 47 367 + 321 Gaps:48 76.55 388 39.73 2e-53 Vacuolar protein-sorting-associated protein 36 OS Xenopus laevis GN vps36 PE 2 SV 1
blastp_uniprot_sprot sp|Q54T18|VPS36_DICDI 180 367 + 188 Gaps:13 30.93 611 46.56 8e-41 Vacuolar protein-sorting-associated protein 36 OS Dictyostelium discoideum GN vps36 PE 3 SV 1
blastp_uniprot_sprot sp|Q9VU87|VPS36_DROME 45 356 + 312 Gaps:43 74.94 399 33.44 5e-36 Vacuolar protein-sorting-associated protein 36 OS Drosophila melanogaster GN Vps36 PE 2 SV 2
blastp_uniprot_sprot sp|O43038|VPS36_SCHPO 179 353 + 175 Gaps:6 37.04 467 24.86 3e-10 Vacuolar protein-sorting-associated protein 36 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN vps36 PE 3 SV 1
rpsblast_cdd gnl|CDD|190890 185 370 + 186 Gaps:14 84.02 219 35.33 4e-44 pfam04157 EAP30 EAP30/Vps36 family. This family includes EAP30 as well as the Vps36 protein. Vps36 is involved in Golgi to endosome trafficking. EAP30 is a subunit of the ELL complex. The ELL is an 80-kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity.
rpsblast_cdd gnl|CDD|204687 11 109 + 99 Gaps:16 95.70 93 37.08 1e-08 pfam11605 Vps36_ESCRT-II Vacuolar protein sorting protein 36 Vps36. Vps36 is a subunit of ESCRT-II a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28 a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes.
rpsblast_kog gnl|CDD|37971 8 361 + 354 Gaps:37 79.86 432 39.42 4e-80 KOG2760 KOG2760 KOG2760 Vacuolar sorting protein VPS36 [Intracellular trafficking secretion and vesicular transport].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 4 119 116 SSF50729 none none none
PANTHER 5 360 356 PTHR13128:SF12 none none none
ProSiteProfiles 9 153 145 PS51495 none GLUE domain profile. IPR021648
PANTHER 5 360 356 PTHR13128 none none none
Pfam 185 367 183 PF04157 none EAP30/Vps36 family IPR007286
Phobius 1 358 358 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 276 352 77 G3DSA:1.10.10.10 none none IPR011991
Phobius 359 378 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 379 403 25 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 11 109 99 PF11605 none Vacuolar protein sorting protein 36 Vps36 IPR021648
SUPERFAMILY 267 351 85 SSF46785 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting