Protein : Qrob_P0345400.2 Q. robur
Protein Identifier  ? Qrob_P0345400.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR23135:SF4 - UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE Gene Prediction Quality  validated
Protein length 

Sequence

Length: 641  
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0016874 ligase activity Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO:0008360 regulation of cell shape Any process that modulates the surface configuration of a cell.
GO:0016881 acid-amino acid ligase activity Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO:0051301 cell division The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10018956mg 3 633 + 631 Gaps:21 86.98 722 82.17 0.0 hypothetical protein
blastp_kegg lcl|cit:102630045 3 633 + 631 Gaps:21 81.24 773 81.69 0.0 uncharacterized LOC102630045
blastp_kegg lcl|pper:PRUPE_ppa001774mg 6 633 + 628 Gaps:13 80.18 767 85.53 0.0 hypothetical protein
blastp_kegg lcl|pmum:103337530 6 633 + 628 Gaps:13 80.18 767 85.37 0.0 uncharacterized LOC103337530
blastp_kegg lcl|cmo:103482756 3 633 + 631 Gaps:11 80.87 779 80.00 0.0 uncharacterized LOC103482756
blastp_kegg lcl|pxb:103938470 5 633 + 629 Gaps:13 80.31 767 84.58 0.0 uncharacterized LOC103938470
blastp_kegg lcl|sly:101055537 5 633 + 629 Gaps:14 80.29 771 81.26 0.0 Hop-interacting protein THI138
blastp_kegg lcl|sot:102596510 3 633 + 631 Gaps:14 80.86 768 80.52 0.0 uncharacterized LOC102596510
blastp_kegg lcl|tcc:TCM_016268 1 633 + 633 Gaps:26 81.37 773 82.19 0.0 Acid-amino acid ligases ligases ATP binding ATP binding ligases isoform 1
blastp_kegg lcl|pxb:103963858 6 633 + 628 Gaps:16 80.26 770 84.14 0.0 uncharacterized LOC103963858
blastp_pdb 2xja_D 237 634 + 398 Gaps:19 73.83 535 40.25 3e-58 mol:protein length:535 UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2
blastp_pdb 2xja_C 237 634 + 398 Gaps:19 73.83 535 40.25 3e-58 mol:protein length:535 UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2
blastp_pdb 2xja_B 237 634 + 398 Gaps:19 73.83 535 40.25 3e-58 mol:protein length:535 UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2
blastp_pdb 2xja_A 237 634 + 398 Gaps:19 73.83 535 40.25 3e-58 mol:protein length:535 UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2
blastp_pdb 2wtz_D 237 634 + 398 Gaps:19 73.83 535 40.25 3e-58 mol:protein length:535 UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2
blastp_pdb 2wtz_C 237 634 + 398 Gaps:19 73.83 535 40.25 3e-58 mol:protein length:535 UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2
blastp_pdb 2wtz_B 237 634 + 398 Gaps:19 73.83 535 40.25 3e-58 mol:protein length:535 UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2
blastp_pdb 2wtz_A 237 634 + 398 Gaps:19 73.83 535 40.25 3e-58 mol:protein length:535 UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2
blastp_pdb 1e8c_B 243 633 + 391 Gaps:23 79.12 498 37.82 8e-55 mol:protein length:498 UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2 6-D
blastp_pdb 1e8c_A 243 633 + 391 Gaps:23 79.12 498 37.82 8e-55 mol:protein length:498 UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2 6-D
blastp_uniprot_sprot sp|Q03523|MURE_BACSU 236 633 + 398 Gaps:13 79.55 494 43.77 2e-99 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase OS Bacillus subtilis (strain 168) GN murE PE 3 SV 1
blastp_uniprot_sprot sp|Q65JY4|MURE_BACLD 213 633 + 421 Gaps:14 85.04 488 43.13 1e-97 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase OS Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN murE PE 3 SV 1
blastp_uniprot_sprot sp|A7Z4E1|MURE_BACA2 213 638 + 426 Gaps:16 85.71 490 42.38 1e-95 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase OS Bacillus amyloliquefaciens (strain FZB42) GN murE PE 3 SV 1
blastp_uniprot_sprot sp|A8MH31|MURE_ALKOO 213 633 + 421 Gaps:15 84.19 487 39.27 1e-94 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase OS Alkaliphilus oremlandii (strain OhILAs) GN murE PE 3 SV 1
blastp_uniprot_sprot sp|A6TS66|MURE_ALKMQ 213 633 + 421 Gaps:12 83.20 494 40.39 3e-92 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase OS Alkaliphilus metalliredigens (strain QYMF) GN murE PE 3 SV 1
blastp_uniprot_sprot sp|Q8Y5L9|MURE_LISMO 213 633 + 421 Gaps:19 84.32 491 39.61 8e-91 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase OS Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN murE PE 3 SV 1
blastp_uniprot_sprot sp|Q0AYR3|MURE_SYNWW 231 633 + 403 Gaps:7 80.98 489 43.69 2e-90 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase OS Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) GN murE PE 3 SV 1
blastp_uniprot_sprot sp|A5I1T6|MURE_CLOBH 236 633 + 398 Gaps:39 80.95 483 41.69 2e-90 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase OS Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN murE PE 3 SV 1
blastp_uniprot_sprot sp|A7FTY1|MURE_CLOB1 236 633 + 398 Gaps:39 80.95 483 41.69 2e-90 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase OS Clostridium botulinum (strain ATCC 19397 / Type A) GN murE PE 3 SV 1
blastp_uniprot_sprot sp|Q81WC7|MURE_BACAN 236 635 + 400 Gaps:13 80.45 491 42.28 2e-90 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase OS Bacillus anthracis GN murE PE 3 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 212 363 152 PTHR23135 none none none
PANTHER 379 633 255 PTHR23135 none none none
Gene3D 555 633 79 G3DSA:3.90.190.20 "UniPathway:UPA00219" none IPR004101
SUPERFAMILY 551 634 84 SSF53244 "UniPathway:UPA00219" none IPR004101
TIGRFAM 235 633 399 TIGR01085 "UniPathway:UPA00219" murE: UDP-N-acetylmuramyl-tripeptide synthetase IPR005761
SUPERFAMILY 213 316 104 SSF63418 "UniPathway:UPA00219" none IPR000713
Gene3D 228 314 87 G3DSA:3.40.1390.10 "UniPathway:UPA00219" none IPR000713
Pfam 551 633 83 PF02875 "UniPathway:UPA00219" Mur ligase family, glutamate ligase domain IPR004101
Pfam 325 530 206 PF08245 "UniPathway:UPA00219" Mur ligase middle domain IPR013221
SUPERFAMILY 316 548 233 SSF53623 "UniPathway:UPA00219" none IPR013221
Gene3D 316 554 239 G3DSA:3.40.1190.10 "UniPathway:UPA00219" none IPR013221
PANTHER 212 363 152 PTHR23135:SF4 none none none
PANTHER 379 633 255 PTHR23135:SF4 none none none
Pfam 236 313 78 PF01225 "UniPathway:UPA00219" Mur ligase family, catalytic domain IPR000713

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting