Protein : Qrob_P0343800.2 Q. robur
Protein Identifier  ? Qrob_P0343800.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR31602:SF2 - GROWTH-REGULATING FACTOR 1-RELATED (PTHR31602:SF2) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 205  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0032502 developmental process A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_034655 44 178 + 135 Gaps:46 29.15 614 55.31 4e-48 Growth-regulating factor 1
blastp_kegg lcl|vvi:100260890 44 178 + 135 Gaps:47 29.80 604 53.33 6e-46 uncharacterized LOC100260890
blastp_kegg lcl|mdm:103400120 44 172 + 129 Gaps:24 48.55 311 51.66 1e-37 growth-regulating factor 1-like
blastp_kegg lcl|pvu:PHAVU_001G031000g 44 178 + 135 Gaps:46 29.44 608 51.96 3e-37 hypothetical protein
blastp_kegg lcl|gmx:100818860 28 178 + 151 Gaps:50 33.50 600 48.76 1e-36 growth-regulating factor 6-like
blastp_kegg lcl|rcu:RCOM_1586340 44 178 + 135 Gaps:48 27.71 617 51.46 2e-36 hypothetical protein
blastp_kegg lcl|pxb:103951485 44 172 + 129 Gaps:24 25.99 581 52.98 5e-35 growth-regulating factor 1-like
blastp_kegg lcl|gmx:100819396 28 178 + 151 Gaps:56 33.00 609 46.77 2e-34 growth-regulating factor 6-like
blastp_kegg lcl|gmx:100807080 28 178 + 151 Gaps:56 33.84 594 46.27 1e-33 growth-regulating factor 6-like
blastp_kegg lcl|pop:POPTR_0002s11590g 44 178 + 135 Gaps:51 37.50 464 45.40 1e-32 POPTRDRAFT_551755 hypothetical protein
blastp_uniprot_sprot sp|Q6AWY1|GRF8_ORYSJ 99 166 + 68 Gaps:9 18.83 409 57.14 3e-19 Growth-regulating factor 8 OS Oryza sativa subsp. japonica GN GRF8 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWY2|GRF7_ORYSJ 88 163 + 76 none 18.49 411 51.32 2e-17 Growth-regulating factor 7 OS Oryza sativa subsp. japonica GN GRF7 PE 2 SV 2
blastp_uniprot_sprot sp|Q6AWY3|GRF6_ORYSJ 108 157 + 50 none 8.29 603 72.00 3e-16 Growth-regulating factor 6 OS Oryza sativa subsp. japonica GN GRF6 PE 2 SV 2
blastp_uniprot_sprot sp|O81001|GRF1_ARATH 35 188 + 154 Gaps:44 34.72 530 36.96 4e-12 Growth-regulating factor 1 OS Arabidopsis thaliana GN GRF1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8L8A6|GRF5_ARATH 102 158 + 57 Gaps:3 13.60 397 55.56 5e-12 Growth-regulating factor 5 OS Arabidopsis thaliana GN GRF5 PE 1 SV 1
blastp_uniprot_sprot sp|Q8L8A8|GRF2_ARATH 109 178 + 70 Gaps:9 12.15 535 52.31 1e-11 Growth-regulating factor 2 OS Arabidopsis thaliana GN GRF2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AWY8|GRF1_ORYSJ 118 158 + 41 Gaps:2 10.83 397 62.79 2e-10 Growth-regulating factor 1 OS Oryza sativa subsp. japonica GN GRF1 PE 3 SV 1
blastp_uniprot_sprot sp|A2XA73|GRF1_ORYSI 118 158 + 41 Gaps:2 10.86 396 62.79 2e-10 Growth-regulating factor 1 OS Oryza sativa subsp. indica GN GRF1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWY6|GRF3_ORYSJ 108 157 + 50 Gaps:4 13.95 387 59.26 2e-10 Growth-regulating factor 3 OS Oryza sativa subsp. japonica GN GRF3 PE 3 SV 2
blastp_uniprot_sprot sp|Q9ZQ12|GRF6_ARATH 114 155 + 42 none 17.21 244 59.52 8e-10 Growth-regulating factor 6 OS Arabidopsis thaliana GN GRF6 PE 2 SV 2
rpsblast_cdd gnl|CDD|204086 118 153 + 36 none 97.30 37 61.11 7e-13 pfam08880 QLQ QLQ. The QLQ domain is named after the conserved Gln Leu Gln motif. The QLQ domain is found at the N-terminus of SWI2/SNF2 protein which has been shown to be involved in protein-protein interactions. This domain has thus been postulated to be involved in mediating protein interactions.
rpsblast_cdd gnl|CDD|198019 117 151 + 35 Gaps:1 100.00 36 50.00 1e-07 smart00951 QLQ QLQ is named after the conserved Gln Leu Gln motif. QLQ is found at the N-terminus of SWI2/SNF2 protein which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 117 153 37 SM00951 none none IPR014978
ProSiteProfiles 118 153 36 PS51666 none QLQ domain profile. IPR014978
Pfam 118 153 36 PF08880 none QLQ IPR014978
PANTHER 92 160 69 PTHR31602:SF2 none none none
PANTHER 92 160 69 PTHR31602 none none IPR031137

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting