Protein : Qrob_P0342290.2 Q. robur
Protein Identifier  ? Qrob_P0342290.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF03161 - LAGLIDADG DNA endonuclease family Gene Prediction Quality  validated
Protein length 

Sequence

Length: 799  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0004519 endonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103335405 41 793 + 753 Gaps:8 91.20 830 77.28 0.0 pentatricopeptide repeat-containing protein At2g15820
blastp_kegg lcl|pxb:103968009 1 798 + 798 Gaps:21 95.54 830 74.40 0.0 pentatricopeptide repeat-containing protein At2g15820
blastp_kegg lcl|vvi:100258959 7 795 + 789 Gaps:25 92.83 823 75.26 0.0 pentatricopeptide repeat-containing protein At2g15820-like
blastp_kegg lcl|pper:PRUPE_ppa001679mg 21 793 + 773 Gaps:56 91.81 781 76.71 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0774040 57 787 + 731 Gaps:11 87.90 835 73.98 0.0 pentatricopeptide repeat-containing protein putative
blastp_kegg lcl|tcc:TCM_006996 3 792 + 790 Gaps:16 94.78 823 71.79 0.0 Endonucleases isoform 2
blastp_kegg lcl|fve:101312230 47 797 + 751 Gaps:9 93.70 794 70.30 0.0 pentatricopeptide repeat-containing protein At2g15820-like
blastp_kegg lcl|cit:102612069 4 797 + 794 Gaps:19 99.49 787 69.86 0.0 pentatricopeptide repeat-containing protein At2g15820-like
blastp_kegg lcl|cic:CICLE_v10027854mg 35 797 + 763 Gaps:7 97.08 787 70.29 0.0 hypothetical protein
blastp_kegg lcl|cmo:103502781 20 792 + 773 Gaps:9 96.73 796 69.48 0.0 pentatricopeptide repeat-containing protein At2g15820
blastp_uniprot_sprot sp|Q9XIL5|PP154_ARATH 1 787 + 787 Gaps:14 92.70 849 61.25 0.0 Pentatricopeptide repeat-containing protein At2g15820 OS Arabidopsis thaliana GN At2g15820 PE 2 SV 3
blastp_uniprot_sprot sp|Q9FIT7|PP442_ARATH 169 556 + 388 Gaps:47 53.70 974 27.92 7e-15 Pentatricopeptide repeat-containing protein At5g61990 mitochondrial OS Arabidopsis thaliana GN At5g61990 PE 2 SV 1
blastp_uniprot_sprot sp|O04491|PPR26_ARATH 156 537 + 382 Gaps:34 55.35 607 37.80 2e-14 Putative pentatricopeptide repeat-containing protein At1g09680 OS Arabidopsis thaliana GN At1g09680 PE 3 SV 1
blastp_uniprot_sprot sp|Q9FGR7|PP426_ARATH 243 537 + 295 Gaps:15 39.83 723 24.31 1e-13 Pentatricopeptide repeat-containing protein At5g50280 chloroplastic OS Arabidopsis thaliana GN EMB1006 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LFF1|PP281_ARATH 167 541 + 375 Gaps:74 57.69 754 22.07 2e-12 Pentatricopeptide repeat-containing protein At3g53700 chloroplastic OS Arabidopsis thaliana GN MEE40 PE 2 SV 1
blastp_uniprot_sprot sp|Q76C99|RF1_ORYSI 122 576 + 455 Gaps:69 64.22 791 37.60 6e-12 Protein Rf1 mitochondrial OS Oryza sativa subsp. indica GN Rf1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0WMY5|PP365_ARATH 185 541 + 357 Gaps:23 35.92 952 22.81 1e-11 Pentatricopeptide repeat-containing protein At5g04810 chloroplastic OS Arabidopsis thaliana GN PPR4 PE 1 SV 1
blastp_uniprot_sprot sp|O80958|PP194_ARATH 163 543 + 381 Gaps:48 58.13 867 25.79 3e-11 Pentatricopeptide repeat-containing protein At2g39230 mitochondrial OS Arabidopsis thaliana GN LOJ PE 1 SV 1
blastp_uniprot_sprot sp|Q9M9X9|PPR18_ARATH 201 545 + 345 Gaps:80 42.86 987 31.91 2e-10 Pentatricopeptide repeat-containing protein At1g06710 mitochondrial OS Arabidopsis thaliana GN At1g06710 PE 3 SV 1
blastp_uniprot_sprot sp|Q5G1S8|PP241_ARATH 121 537 + 417 Gaps:91 57.78 1440 24.88 2e-10 Pentatricopeptide repeat-containing protein At3g18110 chloroplastic OS Arabidopsis thaliana GN EMB1270 PE 2 SV 2
rpsblast_cdd gnl|CDD|202560 579 746 + 168 Gaps:9 100.00 177 29.38 1e-27 pfam03161 LAGLIDADG_2 LAGLIDADG DNA endonuclease family. This is a family of site-specific DNA endonucleases encoded by DNA mobile elements. Similar to pfam00961 the members of this family are also LAGLIDADG endonucleases.

31 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 4 11 8 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Gene3D 239 276 38 G3DSA:1.25.40.10 none none IPR011990
Gene3D 377 539 163 G3DSA:1.25.40.10 none none IPR011990
Gene3D 669 761 93 G3DSA:3.10.28.10 none none IPR027434
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 148 552 405 PTHR24015:SF203 none none none
Pfam 579 745 167 PF03161 none LAGLIDADG DNA endonuclease family IPR004860
SUPERFAMILY 353 547 195 SSF81901 none none none
PANTHER 697 758 62 PTHR24015 none none none
ProSiteProfiles 222 259 38 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Gene3D 551 667 117 G3DSA:3.10.28.10 none none IPR027434
ProSiteProfiles 514 548 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 481 509 29 PF01535 none PPR repeat IPR002885
Pfam 517 544 28 PF01535 none PPR repeat IPR002885
Pfam 382 403 22 PF01535 none PPR repeat IPR002885
PANTHER 2 49 48 PTHR24015:SF203 none none none
PANTHER 697 758 62 PTHR24015:SF203 none none none
PANTHER 107 121 15 PTHR24015:SF203 none none none
PANTHER 2 49 48 PTHR24015 none none none
PANTHER 148 552 405 PTHR24015 none none none
PANTHER 107 121 15 PTHR24015 none none none
TIGRFAM 517 549 33 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 481 509 29 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
Phobius 12 16 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 16 16 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 17 798 782 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 571 757 187 SSF55608 none none IPR027434
ProSiteProfiles 187 221 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 478 512 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 409 443 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting