Protein : Qrob_P0340730.2 Q. robur
Protein Identifier  ? Qrob_P0340730.2 Organism . Name  Quercus robur
Score  48.3 Score Type  egn
Protein Description  (M=2) KOG4031 - Vesicle coat protein clathrin light chain [Intracellular trafficking secretion and vesicular transport]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 335  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0005198 structural molecule activity The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell.
GO:0030130 clathrin coat of trans-Golgi network vesicle A clathrin coat found on a vesicle of the trans-Golgi network.
GO:0030132 clathrin coat of coated pit The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101207311 1 334 + 334 Gaps:40 99.68 313 69.55 1e-121 clathrin light chain 1-like
blastp_kegg lcl|pper:PRUPE_ppa008254mg 1 325 + 325 Gaps:30 98.23 339 66.97 5e-120 hypothetical protein
blastp_kegg lcl|cmo:103484535 1 334 + 334 Gaps:27 99.68 310 72.82 4e-119 clathrin light chain 1-like
blastp_kegg lcl|gmx:100818117 1 325 + 325 Gaps:18 97.83 322 76.83 5e-118 clathrin light chain 1-like
blastp_kegg lcl|pmum:103324732 1 325 + 325 Gaps:31 97.95 341 68.26 3e-116 clathrin light chain 1-like
blastp_kegg lcl|gmx:100813474 1 334 + 334 Gaps:29 100.00 313 76.36 2e-115 uncharacterized LOC100813474
blastp_kegg lcl|vvi:100854215 1 333 + 333 Gaps:52 97.87 375 60.22 1e-114 clathrin light chain 1-like
blastp_kegg lcl|pvu:PHAVU_006G187800g 1 334 + 334 Gaps:28 100.00 314 75.80 3e-114 hypothetical protein
blastp_kegg lcl|cit:102611533 1 325 + 325 Gaps:19 95.36 323 71.10 5e-114 clathrin light chain 1-like
blastp_kegg lcl|fve:101297618 1 332 + 332 Gaps:31 100.00 341 62.46 7e-113 clathrin light chain 1-like
blastp_uniprot_sprot sp|Q9SKU1|CLC1_ARATH 110 332 + 223 Gaps:10 65.38 338 66.52 4e-75 Clathrin light chain 1 OS Arabidopsis thaliana GN At2g20760 PE 2 SV 1
blastp_uniprot_sprot sp|O04209|CLC2_ARATH 101 267 + 167 Gaps:6 67.05 258 65.32 1e-65 Clathrin light chain 2 OS Arabidopsis thaliana GN CLC2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5Z402|CLC2_ORYSJ 114 286 + 173 Gaps:2 60.14 291 73.71 5e-64 Clathrin light chain 2 OS Oryza sativa subsp. japonica GN Os06g0731800 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XKE9|CLC1_ORYSJ 77 325 + 249 Gaps:30 73.42 301 67.42 2e-63 Clathrin light chain 1 OS Oryza sativa subsp. japonica GN Os04g0679100 PE 2 SV 1
blastp_uniprot_sprot sp|F4J5M9|CLC3_ARATH 104 275 + 172 Gaps:7 63.95 258 64.85 1e-58 Clathrin light chain 3 OS Arabidopsis thaliana GN At3g51890 PE 2 SV 1
blastp_uniprot_sprot sp|Q6Z3A8|CLC3_ORYSJ 114 262 + 149 Gaps:11 42.98 363 62.82 1e-52 Clathrin light chain 3 OS Oryza sativa subsp. japonica GN Os07g0461500 PE 3 SV 1
rpsblast_cdd gnl|CDD|189835 70 260 + 191 Gaps:26 73.33 225 27.27 4e-12 pfam01086 Clathrin_lg_ch Clathrin light chain.
rpsblast_kog gnl|CDD|39234 37 263 + 227 Gaps:49 98.15 216 22.64 1e-06 KOG4031 KOG4031 KOG4031 Vesicle coat protein clathrin light chain [Intracellular trafficking secretion and vesicular transport].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 24 308 285 PTHR10639:SF7 none none none
Coils 132 164 33 Coil none none none
PANTHER 24 308 285 PTHR10639 "Reactome:REACT_11123";signature_desc=CLATHRIN LIGHT CHAIN none IPR000996
Pfam 119 263 145 PF01086 "Reactome:REACT_11123" Clathrin light chain IPR000996

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting